Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20550 630 / 0 O-fucosyltransferase family protein (.1) AT1G76270 624 / 0 O-fucosyltransferase family protein (.1) AT4G38390 622 / 0 RHS17 root hair specific 17 (.1) AT4G16650 495 / 4e-171 O-fucosyltransferase family protein (.1) AT5G64600 316 / 2e-101 O-fucosyltransferase family protein (.1) AT1G22460 310 / 6e-99 O-fucosyltransferase family protein (.1) AT5G15740 296 / 3e-94 RRT1 O-fucosyltransferase family protein (.1) AT1G35510 297 / 1e-93 O-fucosyltransferase family protein (.1) AT2G01480 296 / 2e-93 O-fucosyltransferase family protein (.1) AT1G38065 293 / 2e-93 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023948 [exp] 942 / 0 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 628 / 0 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 626 / 0 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 624 / 0 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 503 / 3e-174 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 503 / 6e-174 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 491 / 4e-169 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 481 / 7e-165 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 307 / 5e-97 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183200 [exp] 666 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 654 / 0 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 626 / 0 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 622 / 0 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 517 / 3e-179 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 514 / 2e-178 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 304 / 4e-96 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 301 / 9e-96 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 300 / 2e-95 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 299 / 3e-94 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10014444 pacid=23143747 polypeptide=Lus10014444 locus=Lus10014444.g ID=Lus10014444.BGIv1.0 annot-version=v1.0 ATGAAGAAGAATAAGAACGGCGGCATTCAGCTCTTCCACAATCACCACCACCACCACCACTACAACTGCATCGCCGCTCAGTTCAGCCACCACCGCCGCC GTATACATCTTTTCCCGTTGATCTCCGCCTTCTCCGCCTCTGTCCTCCTCTTCCTCGCCGCCATCTCATTCATCTCCTCTCCGCCGCCTCTCGTTGAGCG CCGCCACCTCCTCCAGCTCTCCTCGCCGCTACTCCTCAACGGCGGAGCCGGTGACGATGCGGCGCCAGAGGACGATTCCGTTGCGGTTACGAGATTTCGC GTCCCGGAGACCGGTGGAAGCTTAGGCCGGGATTTGTGGAGCTCTCCGTCGTCGGACTTCTTCTACGGTTGCAGCAACGCCAGCGAAAAGTTCCGAACTG CTGAGAAGAAGACGGAACCGGATCGATACTTGTTGATCGTCACCAGCGGAGGATTGAATCAACAGAGAACAGGGATAACTGATGCAGTAGTTGCAGCATA TATCTTGAATGCTACTCTCATCGTCCCAAAGTTGGATCAGCAATCCTTCTGGAAAGACTCCAGCAATTTCACGGAGATATTCGACGTGGACTGGTTCATT ACATCCCTCTCCAAAGACGTTCGGATCATCAAAGAACTCCCAAACGACGGTGAGAAGAAGCTAGTTTCGCCGTATCACATGAGAGTTCCGAGGAAATGTA CTCCATCATGCTACGAGATGAAAGTTCTCCCCGTCCTTAACAAGAAGCACGCTGTTCAACTTGGCAAATTCGACTACCGGCTCTCGAACCGGCTAGAACC GGACTTGCAGAAGCTGAGATGCAGAGTCAACTACCACGCCTTGAAGTTCACTGATCCGATCGCCGAAATGGGAGCAAAGTTGGCGGAGAGGATGAGAAGG AAAGCTAAGCACTTCATTGCCCTGCACTTGAGGTTTGAGCCTGATATGCTAGCTTTCTCCGGGTGTGATTATGGTGGCGGAGATAAAGAGAAGTCGGAGC TTGGCCAAATCAGGCTGAGATGGAAGAGTTTACACCAAAAGAACCCAGAGAAGGAAAGAAGGCATGGGAGGTGTCCACTGACACCGGAGGAATTGGGACT AATGCTCCGAGCATTGGGATTCGGAAGCGAAGTTCACATCTACGTAGCTTCAGGGGAGGTGTACGGCGGCGAGGAAACGCTAGCCCCGCTCAAATCCCTC TTCCCCAACTTCCACACGAAGGAGACATTAGCAACTAAGGAAGAACTAGCAGCATTCACGCCCTTCTCTTCTCGAATGGCTGCTATCGACTTCACCGTCT GCGATGAGAGTGACGTCTTTGTCACTAACAATAACGGCAACATGGCTCGAATCCTCGCCGGCCGCCGGAGATACATGGGGCACAAGCCAACGATTCGACC AAACGCGAAGAAGCTGTACAAGCTGTTCATGACGCGAGACAACACGACGTGGGAAGAATTCGGCTCGAGACTCCGGTCGAGTCAAATCGGGTTCATTGAA TTTGAGAGCACGAGTAGTGGCGGAGATTCTGACTATCAGACGACGACGACTGCGGAGGTAGACGAACAGCACTTGTCGGATTCAGAGTCGCCGGATATTA TTGGGACCGGCGGCGGGTTGTTGGAAGAGTTGTTTACGGACTGA
AA sequence Show only first row Show all	>Lus10014444 pacid=23143747 polypeptide=Lus10014444 locus=Lus10014444.g ID=Lus10014444.BGIv1.0 annot-version=v1.0 MKKNKNGGIQLFHNHHHHHHYNCIAAQFSHHRRRIHLFPLISAFSASVLLFLAAISFISSPPPLVERRHLLQLSSPLLLNGGAGDDAAPEDDSVAVTRFR VPETGGSLGRDLWSSPSSDFFYGCSNASEKFRTAEKKTEPDRYLLIVTSGGLNQQRTGITDAVVAAYILNATLIVPKLDQQSFWKDSSNFTEIFDVDWFI TSLSKDVRIIKELPNDGEKKLVSPYHMRVPRKCTPSCYEMKVLPVLNKKHAVQLGKFDYRLSNRLEPDLQKLRCRVNYHALKFTDPIAEMGAKLAERMRR KAKHFIALHLRFEPDMLAFSGCDYGGGDKEKSELGQIRLRWKSLHQKNPEKERRHGRCPLTPEELGLMLRALGFGSEVHIYVASGEVYGGEETLAPLKSL FPNFHTKETLATKEELAAFTPFSSRMAAIDFTVCDESDVFVTNNNGNMARILAGRRRYMGHKPTIRPNAKKLYKLFMTRDNTTWEEFGSRLRSSQIGFIE FESTSSGGDSDYQTTTTAEVDEQHLSDSESPDIIGTGGGLLEELFTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	0	1
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	2.8	0.9226
AT4G33920			Protein phosphatase 2C family ...		Lus10019302 [exp]	3.5	0.8515
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	8.1	0.8813
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	8.1	0.8333
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040099 [exp]	8.8	0.8407
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	10.5	0.8465
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007434 [exp]	12.0	0.8297
AT1G22170			Phosphoglycerate mutase family...		Lus10020910 [exp]	13.5	0.7525
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	14.0	0.8012
AT3G29180			Protein of unknown function (D...		Lus10037132 [exp]	14.8	0.7832

Compare expression of checked genes

Lus10014444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.