Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35240 573 / 0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 528 / 8e-178 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 294 / 2e-86 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 290 / 1e-85 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 212 / 4e-59 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 175 / 1e-45 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 164 / 2e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 145 / 1e-35 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 142 / 1e-34 Protein of unknown function (DUF630 and DUF632) (.1) AT5G54480 139 / 4e-34 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023949 [exp] 916 / 0 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 299 / 1e-90 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 296 / 2e-88 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10012276 [exp] 209 / 4e-58 AT4G35240 248 / 7e-74 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10016004 [exp] 205 / 9e-57 AT4G35240 253 / 1e-75 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024039 [exp] 185 / 4e-49 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 185 / 5e-49 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 174 / 3e-45 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10015534 [exp] 173 / 3e-45 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142900 [exp] 672 / 0 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 665 / 0 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G249400 [exp] 362 / 9e-115 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 337 / 2e-105 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G179100 [exp] 314 / 3e-94 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 311 / 2e-93 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G070200 [exp] 262 / 4e-76 AT1G21740 315 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 191 / 4e-51 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 187 / 1e-49 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 176 / 9e-46 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10014445 pacid=23143710 polypeptide=Lus10014445 locus=Lus10014445.g ID=Lus10014445.BGIv1.0 annot-version=v1.0 ATGGGCTGCGCTAGCTCCAAGCTCGACGATCTACCGGCGGTGGCTCTCTGCCGCGAGCGCTCCACTTACCTCAACGAAGCCATCAACCAGAGATTCCTCT TCGCCGAGGCTCACCTCACTTATCTTCATTCCCTCAGAGGGATTGCTTCCTCTCTGCATCTCTTCATGGAGCAGGATTTCGCCGGCGGAGGCCGCGGCGG GGGGGGCCGGGTAGTCGAGGATGTTGTGAATTCGCCTAAGAAGAAGAGTGGTGGTGCTCAGGTAGCTCATAATCACTCTCACTCTCACTCCGGGTCGCAT CTTCATTTCGTTGGGGATTCAGATGATGATGATGACGACGACGATGATGATGACGGTTCTCATCTTCATGATTCTGATCATTCTTCTCCGATGCATAGCC ACGGTGGTGGAGGTGGAGGCGGCGGCGTTGTGCAGGGAGGAGGGTATATGAGTTCTGAGTACATGCCTATGGTCATGGATCAGAGTTCTTTTCCCGCCGG CGGGTATCCTGGCGACACCACGGGTGGTGGTGGAGGTGGAGGGTATGGTCCTCCGCCTACATACGGCGGATCTTCATCTATGCCACCACCACCGCAGGCG GCTGCTTCATCGTCGAAGCCACCGCCAGCTCCGCCGTCGCCTCCCAGAGCTTCCGCTTGGGATTTCTTGAATCCGTTTGAGAGCTACGACAGCTTCTATC CGTCGAATCCTTCGAATCCTCCGAGCAGGGACTCGAGGGATGTTAGGGAAGAGGAAGGGATTCCTGATTTGGAGGATGAGGATTTACAACACGAGGTTGT CAAGGAAGTACATGGTGATCCTAAGTACGTTGAAGATAGTGATCATGACCGCGGTTATTCGAAATCGGTAATGATGGATGATGAAGAGGAGGAGGTCAAA GGTGGTAAAGTTGGTGAAGCTGAGGCATCTCTTTATCAGACTAGGCCTAGCGTGTCGATGGAAACTGATAGACCTGAGTATGAGGTTCATGTTGTGGAAA AGAAAGTTGTTGATAAGGAGAAATCCTCTGATGATCGTGGCAATGGCGGTGGCGGAGGGTTCAAGGGACGAGCAGGGTGGAGAGATGTACGTCAAGTTGC TGTCGAAATCAAGATTCAGTTTGAGAGGGCTTCTGATTACGGTAATGAAATCGCTAAGATGCTGGAAGTTGGGAAGCTCCCTTATCAGCGAAAACACGTT TCAAAGAAGTTGCACAGTGTTGCTACACCATTGTCGTTAATGTCCACACCACCATCCGCTTCTAATAGTTTGGAGGCTTCTTCCTCCAATGACGGTGCTG GTCCAGCTTACTTGGAGATGGAAGAAGAATTGGCTGTGAGATCGAAGAATCTTTCTTCTACCTTGCAAAAACTTCATCTTTGGGAGAAGAAGCTCTACAC TGAAGTGAAGGCTGAGGAGAAAATGAGGGTAATCCACGACAGGAAGTGCCGAAAGCTGAAACGTTTAGATGAGAGGGGTGCTGAAGCTCACAAAATTGAC GATACTCGAAAATTGATAAGGGATCTGTCAACCAAAATAAGAATTGCAATTCAGGTTGTCGACAAGATCTCCGTCACAATAAACAAAATCAGAGATGACG AGCTATGGCCGCAGCTGAATGATCTGATTCTAGGGTTGAGTAGAATGTGGAAAAATATGCTCGAATGCCATGGAATTCAGTGCCAAGCGATAAAGGAAGC AAAAGGGTTAGGTCCAATGGGGTCGGGGAAGAAGCTGAGTGATGATCATCTCCAAGCTACACTGCAGCTTGAGCAACAACTGCTTAATTGGACTTCCAGT TTCTCTAGTTGGGTTGGAGCTCAGAAGGGTTACGTGAAAGCCTTGAATAATTGGCTGGTGAAATGTCTCCTCTACGAACCCGAAGACACTCCCGACGGAG TGCCTCCCTTTTCGCCCGGGAGGATGGGTGCACCCCCTGTGTTTGTGATATGTAATCAGTGGACGCAAGCTATTGAGAGAATATCCGAAAAGGAAGTGGT CGATTCCATGCGTGTCTTTGCGAACACGGTGTTTAAACTGTGGGAACAAGATAAGGAAGAGATACGCAGCAGAATGGTAACGAACAGGGATATGGAACGG AAAGTTAAGAACTTGGACAGAGAAGATCAGAAGATACAGAAGCAGATTCAAGCACTAGACAAGAAAATGGTTCTTGTTTCTGGAGATGGCGACGGTCTAT CGTTAAGTGGAAACATTGTGTACCACAGTGACACCAGTAATGGCAGTCTGCAAGGCAGTTTGCAGCGGATTTTCGAGGCCATGGAAAGGTTCACAGCTGA GTCCGTGAAAGCTTACGAAGACCTTGTGCAACGTAGCGAAGAAGAAACTAGTGGCGGCGATCACGGGGAAGCTTCATAA
AA sequence Show only first row Show all	>Lus10014445 pacid=23143710 polypeptide=Lus10014445 locus=Lus10014445.g ID=Lus10014445.BGIv1.0 annot-version=v1.0 MGCASSKLDDLPAVALCRERSTYLNEAINQRFLFAEAHLTYLHSLRGIASSLHLFMEQDFAGGGRGGGGRVVEDVVNSPKKKSGGAQVAHNHSHSHSGSH LHFVGDSDDDDDDDDDDDGSHLHDSDHSSPMHSHGGGGGGGGVVQGGGYMSSEYMPMVMDQSSFPAGGYPGDTTGGGGGGGYGPPPTYGGSSSMPPPPQA AASSSKPPPAPPSPPRASAWDFLNPFESYDSFYPSNPSNPPSRDSRDVREEEGIPDLEDEDLQHEVVKEVHGDPKYVEDSDHDRGYSKSVMMDDEEEEVK GGKVGEAEASLYQTRPSVSMETDRPEYEVHVVEKKVVDKEKSSDDRGNGGGGGFKGRAGWRDVRQVAVEIKIQFERASDYGNEIAKMLEVGKLPYQRKHV SKKLHSVATPLSLMSTPPSASNSLEASSSNDGAGPAYLEMEEELAVRSKNLSSTLQKLHLWEKKLYTEVKAEEKMRVIHDRKCRKLKRLDERGAEAHKID DTRKLIRDLSTKIRIAIQVVDKISVTINKIRDDELWPQLNDLILGLSRMWKNMLECHGIQCQAIKEAKGLGPMGSGKKLSDDHLQATLQLEQQLLNWTSS FSSWVGAQKGYVKALNNWLVKCLLYEPEDTPDGVPPFSPGRMGAPPVFVICNQWTQAIERISEKEVVDSMRVFANTVFKLWEQDKEEIRSRMVTNRDMER KVKNLDREDQKIQKQIQALDKKMVLVSGDGDGLSLSGNIVYHSDTSNGSLQGSLQRIFEAMERFTAESVKAYEDLVQRSEEETSGGDHGEAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35240			Protein of unknown function (D...		Lus10014445 [exp]	0	1
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	2.4	0.7929
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10004932 [exp]	7.3	0.7403
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10017619 [exp]	11.4	0.6913
AT4G35240			Protein of unknown function (D...		Lus10023949 [exp]	13.5	0.8131
AT2G33490			hydroxyproline-rich glycoprote...		Lus10001808 [exp]	18.3	0.6983
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	46.1	0.7277
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	50.1	0.6582
AT1G77660			Histone H3 K4-specific methylt...		Lus10028062 [exp]	69.4	0.7195
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10028774 [exp]	70.0	0.6785
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	89.4	0.6982

Compare expression of checked genes

Lus10014445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.