Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 161 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 156 / 3e-45 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 153 / 4e-44 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 152 / 8e-44 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 76 / 4e-15 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 73 / 3e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT2G27880 64 / 1e-10 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT4G35710 61 / 3e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT5G43810 57 / 2e-08 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT4G35720 55 / 4e-08 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025124 [exp] 374 / 5e-130 AT2G17080 217 / 2e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 370 / 7e-129 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 369 / 5e-128 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 360 / 1e-124 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 347 / 9e-120 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 340 / 9e-117 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 327 / 1e-111 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 326 / 4e-111 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 325 / 1e-110 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182700 [exp] 181 / 2e-54 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 173 / 3e-51 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 172 / 2e-50 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 160 / 1e-46 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 159 / 5e-46 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 156 / 5e-45 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 153 / 2e-43 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 149 / 6e-42 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 126 / 8e-34 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 115 / 1e-29 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10014446 pacid=23143671 polypeptide=Lus10014446 locus=Lus10014446.g ID=Lus10014446.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCGCCTTCCACGCTCGATCCAACAGTTTCCCATCAAGACCAATCCCTCTAGTTTCAGAAATCGAAGAGCAACTTTGTAGGTTGAGACAAT CTCAATCTGCCTCCACATCCTCATCCATAAACCAAAATGTTAATGACCTTCAGGATGTGTATGACTGTGTTGACAAGTTGATTCAACTTCCATCAACTCA ACAAGCCATGATCCATGACCAAAACGAGCTACTAGATGGATCTCTGAGACTCTTGGATCTATGCAACGCAGCCAAGGATTCCTTGTCTCTAACGAAAGAG TCGGTTTGTGAACTTCAATCCGCCATTCGTAGAAGGCAAGGAGATCTGGTAGCAGAAACCAAAAGGTACCTCAACTCAAGAAAGACTGTGAAGAAAGCAA TCCAAAAGGCCTTGAAGTGTTATGAAACCAAGAAATCTACTTCTTCCAACAACATCAACGCAATCGACATGATAAGAGAAGCTGAATCCATTGTTGTTGA GGTGTTGGAGAACCTGTTGTCATTCATTTCTCAATCAAACTCCAAGTCAAGCAGCTGGTCTTTGGTCTCCAAGCTGATGGCAAAAAGAGTTATTCCAGCA TCAGAAAACGAATTTGCAGAAGTGGATGCCTGTTTGAAGACGAGCAAATCCAGTGAGGAAATCCAAGCTCTTCTGAAGAACTTGCAGCCATGCATTCAAG ATCTTGAAGAAGGAGTTGAGTCCCTCTTTAGGTGCTTGATCAAAACAAGAGCCTCCATTCTCAACATCTTATTTTCCACTCCAGTTCTCGAGTATGCGAA TGCGAAAATAACGCCACATGAGGGTCAGTGGAACATGATGAATGCGGAAATGTTCGAAGGCGCAAAGATTGGATCTTGGACGTGTGTGAACTTCTCGACT CTGTCAGATTTTGCGGTTGCTAGATTCGCTCACAATCTAATGGACATGTGCCGAAACAAGGGATTGGTAATGTTTGTTTGTTTGTCAGTACCTCCAGTGT ACTACGCTCGTCTTGCTGCGTCCGGGGCTAGGTACTACTTGGAAGGTGACAGTAAGTCTAGCATGAGGAGGGAGGCAAGGCCGATAGTTCCGTTGCCAGA GATCCATGACAAGGTGAAGAACAGAATGTTCTTCTGTTGA
AA sequence Show only first row Show all	>Lus10014446 pacid=23143671 polypeptide=Lus10014446 locus=Lus10014446.g ID=Lus10014446.BGIv1.0 annot-version=v1.0 MAATAFHARSNSFPSRPIPLVSEIEEQLCRLRQSQSASTSSSINQNVNDLQDVYDCVDKLIQLPSTQQAMIHDQNELLDGSLRLLDLCNAAKDSLSLTKE SVCELQSAIRRRQGDLVAETKRYLNSRKTVKKAIQKALKCYETKKSTSSNNINAIDMIREAESIVVEVLENLLSFISQSNSKSSSWSLVSKLMAKRVIPA SENEFAEVDACLKTSKSSEEIQALLKNLQPCIQDLEEGVESLFRCLIKTRASILNILFSTPVLEYANAKITPHEGQWNMMNAEMFEGAKIGSWTCVNFST LSDFAVARFAHNLMDMCRNKGLVMFVCLSVPPVYYARLAASGARYYLEGDSKSSMRREARPIVPLPEIHDKVKNRMFFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10014446 [exp]	0	1
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	3.6	0.9303
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	5.5	0.9183
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10003048 [exp]	5.5	0.9164
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	6.0	0.9217
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10016208 [exp]	6.9	0.9069
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	6.9	0.9149
AT5G19730			Pectin lyase-like superfamily ...		Lus10041815 [exp]	7.7	0.9145
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	8.0	0.9208
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10036524 [exp]	8.7	0.9292
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10038674 [exp]	13.0	0.8733

Compare expression of checked genes

Lus10014446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.