Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 185 / 1e-57 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 181 / 2e-56 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 177 / 1e-54 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 172 / 7e-53 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 112 / 2e-29 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 99 / 4e-24 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 93 / 4e-22 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 80 / 7e-17 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 71 / 3e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 67 / 1e-12 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025119 [exp] 451 / 1e-162 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 396 / 7e-141 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 394 / 6e-140 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 392 / 3e-139 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 384 / 3e-136 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 380 / 2e-134 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 378 / 6e-134 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 374 / 3e-132 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 374 / 3e-132 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 205 / 4e-65 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 200 / 2e-63 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 197 / 2e-62 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 194 / 4e-61 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 184 / 7e-57 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 181 / 5e-56 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 177 / 3e-54 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 176 / 9e-54 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 156 / 3e-46 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 149 / 9e-44 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10014447 pacid=23143667 polypeptide=Lus10014447 locus=Lus10014447.g ID=Lus10014447.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCACGCTCGCTCCAACAGTTTCCCTTCAACATCACACCCTCTAGTTTCAGAGTTTGACGAGCAACTTTGCAGGTTGAGACAAT CTCAAGCTGCTTCCACTTCATTATCATCCATAAGCCACAAACTTAATGGCCTTCAGGATGTGTATTACTGTGTTGACAAGTTGATTCAACTTCCATCAAC TCAACAGGACATGATCCATGACCAAAATGAGCTACTAGATGGATCTCTGAGGCTCTTGGATATGTGCAACACAGCCAAGGATGCCTTGTCTCAAATGAAA GAGTCCGTTGCTGGACTTCAATCTGCCATTCGTAGAAGGCAAGGAGATCTGGTAGCAGAAACCAAGAGTTACCTCAATGCAAGGAAGATTGTGAAGAAAG CAATTCAAAAGTCCTTGAAGGGTAATGAAAACAAGAAATCCACCTCATCCAACAACGGTGATGCAATCGACATGTTAAGAGAAGCTGAATCCATTGTTCT GGAGGTGTTGGAGAACTTGTTGTGTTTCATTTGCCAATCAAACTCCAAGTCCAGCAGCTGGTCATTGGTTTCCAAGCTGATTGCAGTCAAGAAGAATGAA GTTGCTGCAAACACAAATGAATTCGCAGAAGTTGATGCCTGTTTGAAGACAAACAAATCTAGTGAGGAAATCCAAACTCATCTGAAGAACTTGCAGCCAT GCATTCAAGATCTCGAGGAAGGAGTTGAGTCACTCTTTAGGTGTCTCATTAAAACAAGATCCTCCATTCTCAATGTTCACAATCTGTAA
AA sequence Show only first row Show all	>Lus10014447 pacid=23143667 polypeptide=Lus10014447 locus=Lus10014447.g ID=Lus10014447.BGIv1.0 annot-version=v1.0 MAATTFHARSNSFPSTSHPLVSEFDEQLCRLRQSQAASTSLSSISHKLNGLQDVYYCVDKLIQLPSTQQDMIHDQNELLDGSLRLLDMCNTAKDALSQMK ESVAGLQSAIRRRQGDLVAETKSYLNARKIVKKAIQKSLKGNENKKSTSSNNGDAIDMLREAESIVLEVLENLLCFICQSNSKSSSWSLVSKLIAVKKNE VAANTNEFAEVDACLKTNKSSEEIQTHLKNLQPCIQDLEEGVESLFRCLIKTRSSILNVHNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10014447 [exp]	0	1
AT4G35210			Arabidopsis protein of unknown...		Lus10025122 [exp]	3.9	0.9087
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007562 [exp]	5.5	0.9229
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	5.7	0.9270
AT2G17080			Arabidopsis protein of unknown...		Lus10025119 [exp]	6.2	0.9255
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10001132 [exp]	6.7	0.9122
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	7.0	0.9123
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	8.1	0.9120
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	9.8	0.9200
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	10.6	0.9123
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	10.9	0.9065

Compare expression of checked genes

Lus10014447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.