Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35200 184 / 5e-58 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 184 / 6e-58 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 181 / 1e-56 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 175 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 90 / 3e-21 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 90 / 3e-21 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 85 / 2e-19 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 73 / 6e-15 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 70 / 7e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 63 / 1e-11 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023952 [exp] 371 / 2e-131 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 362 / 7e-128 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 362 / 1e-127 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 357 / 1e-125 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 345 / 2e-121 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 341 / 2e-119 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 340 / 3e-119 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 338 / 2e-118 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014449 [exp] 336 / 9e-118 AT2G17080 213 / 6e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182700 [exp] 193 / 3e-61 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 190 / 1e-59 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 189 / 1e-59 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 184 / 2e-57 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 178 / 3e-55 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 177 / 9e-55 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 167 / 6e-51 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 164 / 1e-49 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 143 / 9e-42 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 142 / 3e-41 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10014448 pacid=23143723 polypeptide=Lus10014448 locus=Lus10014448.g ID=Lus10014448.BGIv1.0 annot-version=v1.0 ATGGCATCCACCACCTTCCACGCTCGATCAAACAGTTTCCCATCAAGGACACACCCTCTAGTTTCCGAGTTCGACGAGCAAATTTGCAGGTTGAGACAAT CTCAAGCTGCTTCCACTTCATCATCATCCACTAGCCAAAACCTTAATGGCCTTCAGGATGTGTATGAGTGTGTTGACAAGTTGATTCAACTCCCATCAAC TCAACAAGCCATGATCCATGACCAAAATGAGCTGCTAGATGGTTCCTTGAGAGTGTTGGATATGTGCAACACAGCCAAGGATGTCTTGTCTCAAATGAAA GAATCGGTTTATGAACTTCAATCCGCCATTCGCAGAAGGCAAGGCGATCTGGCAGCAGAAACCAAGAGATACCTCAACTCAAGGAAGATTGTGAAGAAAG CAATTCAAAAGGCCTTCAAGGGTTATGAAACCAAGAAATCAGAGGAACCCCCCCTCATCCAACAACGCTGGTCATTGGTTTCCAAGCTGATTGCATCCAA GAAGACTCAAGTTTCTGAAAACTCAAATGAATTTGCTGAAGTCGATGCCTGTTTGAAGACGAGCAAATCCACTGAGGAAATCCAAGCTCAACTGAAAAAC TTGCAGCCATGCATTCAAGATCTTGAAGAAGGAGTTGAGTCACTCTTTAGGTGTCTCATCAAAACAAGAGCATCCATTCTCAATGTTCACAATCTGTAA
AA sequence Show only first row Show all	>Lus10014448 pacid=23143723 polypeptide=Lus10014448 locus=Lus10014448.g ID=Lus10014448.BGIv1.0 annot-version=v1.0 MASTTFHARSNSFPSRTHPLVSEFDEQICRLRQSQAASTSSSSTSQNLNGLQDVYECVDKLIQLPSTQQAMIHDQNELLDGSLRVLDMCNTAKDVLSQMK ESVYELQSAIRRRQGDLAAETKRYLNSRKIVKKAIQKAFKGYETKKSEEPPLIQQRWSLVSKLIASKKTQVSENSNEFAEVDACLKTSKSTEEIQAQLKN LQPCIQDLEEGVESLFRCLIKTRASILNVHNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10014448 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10025125 [exp]	1.0	0.9357
AT2G17080			Arabidopsis protein of unknown...		Lus10014449 [exp]	2.0	0.9270
AT4G35210			Arabidopsis protein of unknown...		Lus10025122 [exp]	2.4	0.9075
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	6.6	0.8978
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	8.7	0.8923
AT4G34800			SAUR-like auxin-responsive pro...		Lus10012182 [exp]	8.9	0.8849
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	10.4	0.8907
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	12.7	0.8791
AT2G17080			Arabidopsis protein of unknown...		Lus10014447 [exp]	15.7	0.8899
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036352 [exp]	16.0	0.8587

Compare expression of checked genes

Lus10014448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.