Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 151 / 1e-44 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 150 / 3e-44 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 145 / 1e-42 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 140 / 2e-40 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 71 / 4e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 65 / 4e-12 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 54 / 3e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 49 / 9e-07 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 44 / 4e-05 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 41 / 0.0003 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023959 [exp] 348 / 4e-122 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 341 / 4e-119 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 330 / 4e-115 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 330 / 5e-115 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 330 / 9e-115 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025124 [exp] 328 / 4e-114 AT2G17080 217 / 2e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 323 / 3e-112 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 320 / 5e-111 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 320 / 5e-111 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182700 [exp] 172 / 2e-52 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 171 / 6e-52 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 168 / 1e-50 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 155 / 4e-46 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 153 / 4e-45 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 153 / 4e-45 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 148 / 3e-43 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 142 / 1e-40 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 125 / 1e-34 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 117 / 2e-31 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10014449 pacid=23143684 polypeptide=Lus10014449 locus=Lus10014449.g ID=Lus10014449.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCACGCTCGATCCAACAGTTTCCCATCAAGATCACACCCTCTAGTTTCGGAGTTCGACGAGCAACTTTGCAGGTTGAGACAAT CTCAAACTGCTTCCACATCATCATCATCATCATCTTCCATAAGCCACAAGCTCAATGGCCTTCAGGATGTGTATGACTGTGTTGACAAGTTGATTCAACT TCCATCAACTCAGCAAGCCATGATCCATGACCAAAATGAGCTATTAGAAGGATCTCTAAGACTCTTGGATCTATGCAACACAGCCAGGGATGCCTTGTCT CAAACGAAAGAGTCGGTTTGTGAACTTCAGTCTGCCATTCGTAGAAGGCAAAGAGATCTGGTAGCAGAAACCAAAAGATATCTTAACTCAAGGAAGGCTG TGAAGAAAGCAATCCAAAAGGCCTTGAAGGGTATGGAAACCAAGAAATCCACCTCATCCAACAAAGTCAACATGTTAAGAGAAGCTGAATCCGTTGTTGT TGAGGTGTTGGAGAACGTGTTGTCATTCATTTCTCAATCAAACTCCAAGTCAAACAGCTGGTCTTTGGTCTCCAAGCTGATGGCAAACCAAAAAAGGGTT ATTGCAGCATCAGAAAACGAATTTGCAGAAGTGGATGCCTGTATGAAGACAAGCAAATCTAGTGAGGAAGTCCAAGCTCATCTGAAAAACTTGCAGCAAT GCATTCAAGATCTTGAGGAAGGAGTTGAGTCCCTCTTTAGGTGTCTCATCAAAACAAGAGCCTCCATTCTCAACATCTTGTAA
AA sequence Show only first row Show all	>Lus10014449 pacid=23143684 polypeptide=Lus10014449 locus=Lus10014449.g ID=Lus10014449.BGIv1.0 annot-version=v1.0 MAATTFHARSNSFPSRSHPLVSEFDEQLCRLRQSQTASTSSSSSSSISHKLNGLQDVYDCVDKLIQLPSTQQAMIHDQNELLEGSLRLLDLCNTARDALS QTKESVCELQSAIRRRQRDLVAETKRYLNSRKAVKKAIQKALKGMETKKSTSSNKVNMLREAESVVVEVLENVLSFISQSNSKSNSWSLVSKLMANQKRV IAASENEFAEVDACMKTSKSSEEVQAHLKNLQQCIQDLEEGVESLFRCLIKTRASILNIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10014449 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10025125 [exp]	1.4	0.9331
AT2G17080			Arabidopsis protein of unknown...		Lus10014448 [exp]	2.0	0.9270
AT4G35210			Arabidopsis protein of unknown...		Lus10025122 [exp]	8.7	0.8729
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	9.2	0.8781
AT2G17080			Arabidopsis protein of unknown...		Lus10023957 [exp]	14.7	0.8660
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	17.0	0.8703
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	17.1	0.8874
AT2G15730			P-loop containing nucleoside t...		Lus10021749 [exp]	18.6	0.8334
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	19.3	0.8554
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	21.6	0.8543

Compare expression of checked genes

Lus10014449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.