Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 127 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 127 / 5e-36 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 124 / 3e-35 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 120 / 1e-33 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 57 / 1e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 55 / 4e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 47 / 2e-06 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 47 / 3e-06 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 45 / 1e-05 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 44 / 4e-05 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025126 [exp] 275 / 8e-94 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 152 / 7e-46 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 146 / 2e-43 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014446 [exp] 149 / 3e-43 AT2G17080 211 / 3e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 144 / 7e-43 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025121 [exp] 140 / 3e-42 AT2G17080 147 / 6e-44 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 142 / 4e-42 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 141 / 1e-41 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 141 / 2e-41 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 138 / 8e-40 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 120 / 2e-33 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 118 / 3e-32 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 117 / 8e-32 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 113 / 1e-30 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 112 / 4e-30 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 112 / 4e-30 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 112 / 7e-30 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 94 / 5e-23 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 92 / 1e-22 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10014450 pacid=23143722 polypeptide=Lus10014450 locus=Lus10014450.g ID=Lus10014450.BGIv1.0 annot-version=v1.0 ATGGCCGCCACATCTTTCCACGTTCGATCCAACAGTCTGCCCTCAAGGCCACACCCTCTCGTCTCAGAAGTCGAAGAGAACATCTGCAGATTGAGGAGCT CGCAAGCTGCTTCTACTACATCATCCATATCGGACAACCTCAGAAAACTTCAGGATTTACATGATTCTGTAGACAAGTTGTTCCAGTTGCCACTCAACCT TCAGGATCACAAGTTCCTGAACCAGCTATTGGATGGATCTCTTAGACTTCTGGACTTGTGCAACACTGCCAAAGATTCTTTGTCTCAAATGAAGGAGTCT GTTTGCGAACTTCAATCAGTTCTCCGAAGAAAGCAAGGAGATCTAGATCAGAGTGATGTGAAGCAGTACTTGTCCAAGAGAAAGGCAGTCAGGAAGTCCA TCCAGAAAGCATTGAAGAGCTTGAAGAGTATCCAATCTAACAGCAATGACAACCCAGAGATTGTTGCAGTCTTCAGAGACGTTGAAGCCACTACAATCAA CGTGTTCGAGTCCCTAGCTTCTCGAGTCCTTAGCTTCGTTCGTCTCGGTCTCAAGGCCAAGCGGATGGTCATTTGTTTCCAAGCTAAAGCACCAGAAGAA GGTTGCTAA
AA sequence Show only first row Show all	>Lus10014450 pacid=23143722 polypeptide=Lus10014450 locus=Lus10014450.g ID=Lus10014450.BGIv1.0 annot-version=v1.0 MAATSFHVRSNSLPSRPHPLVSEVEENICRLRSSQAASTTSSISDNLRKLQDLHDSVDKLFQLPLNLQDHKFLNQLLDGSLRLLDLCNTAKDSLSQMKES VCELQSVLRRKQGDLDQSDVKQYLSKRKAVRKSIQKALKSLKSIQSNSNDNPEIVAVFRDVEATTINVFESLASRVLSFVRLGLKAKRMVICFQAKAPEE GC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10014450 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10025126 [exp]	1.7	0.9757
AT2G17080			Arabidopsis protein of unknown...		Lus10023964 [exp]	3.5	0.9651
AT3G24750			unknown protein		Lus10038162 [exp]	4.5	0.9679
AT2G17080			Arabidopsis protein of unknown...		Lus10023965 [exp]	5.3	0.9604
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10026040 [exp]	7.7	0.9494
AT3G19200			unknown protein		Lus10019867 [exp]	9.2	0.9435
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023109 [exp]	9.6	0.9233
AT2G17080			Arabidopsis protein of unknown...		Lus10025119 [exp]	10.6	0.9423
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	11.2	0.9532
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Lus10009745 [exp]	11.2	0.9499

Compare expression of checked genes

Lus10014450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.