Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24000 148 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06140 147 / 1e-39 MEF3 mitochondrial editing factor 3, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 146 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 146 / 7e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 146 / 9e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G11460 142 / 7e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 143 / 8e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G43790 140 / 8e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 142 / 1e-37 MEF22 mitochondrial editing factor 22 (.1) AT4G16470 140 / 1e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023710 [exp] 305 / 6e-99 AT4G18750 385 / 3e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 160 / 5e-44 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 155 / 4e-42 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 154 / 2e-41 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10015898 [exp] 147 / 3e-39 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031028 [exp] 145 / 9e-39 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 144 / 4e-38 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 143 / 5e-38 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023251 [exp] 142 / 5e-38 AT1G50270 525 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063900 [exp] 204 / 1e-60 AT3G12770 385 / 7e-125 mitochondrial editing factor 22 (.1) Potri.008G173500 [exp] 171 / 9e-49 AT3G12770 261 / 4e-79 mitochondrial editing factor 22 (.1) Potri.005G012600 [exp] 157 / 4e-43 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 155 / 5e-42 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 154 / 7e-42 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.004G043400 [exp] 152 / 1e-41 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G217900 [exp] 150 / 2e-40 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.018G071800 [exp] 147 / 2e-39 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 147 / 2e-39 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 145 / 4e-39 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014452 pacid=23176850 polypeptide=Lus10014452 locus=Lus10014452.g ID=Lus10014452.BGIv1.0 annot-version=v1.0 ATGAACTTCTTCCGGCCGCTGAAGAGCTCTACCATTCGTTTCACAAGTCGCTCTTACCATTCCGCCAACGACAGCCTCTTCCCATCGCAACTGCTTCTGA ATTTACTTGACTCCGCCAACCGTCTTAAATCCCTTCACTTGATTAGACAGTGTCATCATCGGATTCACCCTGTAGGGCTCACACAAAATCCTTTCTTGGC AACTAAACTCATCTCTGCGTATGCTAATTGCGGCCTCCCAAATGAGTCGCAGCCCATTTTCGATTCACTCCTCAACAGGAGCGAGTTTATCTGGAACGCA CTTATCAACGGGTACGTGAAGAATCGAGCTTATGAACAGTCTTTTGGTTTGTTTTGGGTGATGTGTCGTGGTTCTGTGGTCCCTGGTGCTTATACCCTGG CAAAGATGTCCAAAGCATATGGGGAACATGGGGTGTTTAAGTGCCGGGAGAATGATTCATGGGAAGATTATGAAAACTGGGTTTGTGTGGGATACTGTGG TTGCTCTCTTATGTCGATGTACAGCAAATGTAAGGGGTTTGGAGAATGCTTGAAAGTGTTCGATAAAATGCCCCAAAGAAGTGTGCGTTCTTGGAATGTG GTTATTTCTGGTTATGCAGGCTTAGGAGATGATGCAATCTCTTGGAGCTCGAAGATTTCTGGTTACGGATTGCGTGGGAAAGGTGAGGAAGCCATCTGTC TATACAATCATATGCTTCATCAAGGGTCTAAACCAGATACGATAACAGTAGTTGGTGTTCTTTCTGATTGTGGGAGGTCAGGTTTGGTAAATGAGGGCCT TAATCTCTATCATTCTGCTGTATACAAGCATGGGATGAAGCCAACAGTTGAGGTCTGTGCTTCTGTGGTGGATATGTTGGGAAGATCGGGCCAGCTTGGT GAAGCATTAGACTTCATCAAAACAATGCCAGTAGAACCTAGTCCAAGTGTCTGGGGAGCCTTGTCAGTGCTTCCACAATGCATGGAAATTACCAGATGCA AGATCTAG
AA sequence Show only first row Show all	>Lus10014452 pacid=23176850 polypeptide=Lus10014452 locus=Lus10014452.g ID=Lus10014452.BGIv1.0 annot-version=v1.0 MNFFRPLKSSTIRFTSRSYHSANDSLFPSQLLLNLLDSANRLKSLHLIRQCHHRIHPVGLTQNPFLATKLISAYANCGLPNESQPIFDSLLNRSEFIWNA LINGYVKNRAYEQSFGLFWVMCRGSVVPGAYTLAKMSKAYGEHGVFKCRENDSWEDYENWVCVGYCGCSLMSMYSKCKGFGECLKVFDKMPQRSVRSWNV VISGYAGLGDDAISWSSKISGYGLRGKGEEAICLYNHMLHQGSKPDTITVVGVLSDCGRSGLVNEGLNLYHSAVYKHGMKPTVEVCASVVDMLGRSGQLG EALDFIKTMPVEPSPSVWGALSVLPQCMEITRCKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39530			Tetratricopeptide repeat (TPR)...		Lus10014452 [exp]	0	1
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	5.9	0.7548
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	9.3	0.7224
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10021649 [exp]	15.9	0.7220
					Lus10029579 [exp]	16.1	0.7355
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	25.7	0.7089
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10039814 [exp]	26.9	0.7034
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	29.7	0.6528
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	33.2	0.7031
AT4G15820			unknown protein		Lus10034169 [exp]	34.2	0.6937
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	36.7	0.6975

Compare expression of checked genes

Lus10014452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.