Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05210 129 / 5e-36 Surfeit locus protein 6 (.1.2) AT2G27750 91 / 1e-22 Surfeit locus protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023712 [exp] 248 / 7e-82 AT5G05210 284 / 1e-93 Surfeit locus protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064100 [exp] 145 / 3e-42 AT5G05210 247 / 3e-79 Surfeit locus protein 6 (.1.2) Potri.008G173300 [exp] 139 / 4e-40 AT5G05210 224 / 2e-70 Surfeit locus protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04935 [flax] [poplar] SURF6 Surfeit locus protein 6
Representative CDS sequence Show only first row Show all	>Lus10014455 pacid=23176869 polypeptide=Lus10014455 locus=Lus10014455.g ID=Lus10014455.BGIv1.0 annot-version=v1.0 ATGTCAAACAGAGCGAAGAAAAGAGAAGAGAGGAGTAGTAGGAGGGATATGTTTCAGAAGAAACGGAAGAGGGGGGATGAATCCGAAGGGAAGAAGTCTG CCACAAAGAGTGAGCCTGTAAGAAATGTGGAGAAGGATGCAGAAGAAGCAACCAAGGAACTGAGATTCAGCCATGTGAAGATTGGGGATGAAGAGGACAA TGGAATGATGAAGAAGAGAAAGTTGTCAAAGATGAAGGAGCTTGAGAAAGCTAAAGAGCTGAAGGAAGCAAAGGTGGCGGACCCAGAGAAAGGAGCAAAG GAATCATGGAGAACAGCAGTAATCAAAGCAGCTGGAGTGAAGGTACACGATGATCCAATGCTGTTGAAGCGGAGCATTAATAAGCAGAAGAAGCAGCAAC AGAAGAATGCAGAGAAGTGGAAGGAGAGAGTACGAAGCCAAAATAAGAAGAAAGCAGAAAAACAGGAGAAGAGATCACACAACATATCAGAGAGAGCTGA GCAGAAGAAGATGAGGAAGATTGCCAAGAGGGAGAAGAAGCTGATGCGGCCTGGGCTTGAAGGTCGTCAGAAGGGTTACATCAGTGAAACCACTTCAACC TGA
AA sequence Show only first row Show all	>Lus10014455 pacid=23176869 polypeptide=Lus10014455 locus=Lus10014455.g ID=Lus10014455.BGIv1.0 annot-version=v1.0 MSNRAKKREERSSRRDMFQKKRKRGDESEGKKSATKSEPVRNVEKDAEEATKELRFSHVKIGDEEDNGMMKKRKLSKMKELEKAKELKEAKVADPEKGAK ESWRTAVIKAAGVKVHDDPMLLKRSINKQKKQQQKNAEKWKERVRSQNKKKAEKQEKRSHNISERAEQKKMRKIAKREKKLMRPGLEGRQKGYISETTST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	0	1
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	1.4	0.9474
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	2.0	0.9339
AT3G25120			Mitochondrial import inner mem...		Lus10008094 [exp]	2.2	0.9059
AT1G03330			Small nuclear ribonucleoprotei...		Lus10029641 [exp]	2.8	0.9129
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10023712 [exp]	3.0	0.9178
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	6.3	0.8966
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000639 [exp]	6.5	0.8805
AT1G61620			phosphoinositide binding (.1)		Lus10002584 [exp]	6.9	0.8932
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10003133 [exp]	7.7	0.8825
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10038139 [exp]	8.5	0.8793

Compare expression of checked genes

Lus10014455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.