Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13460 410 / 2e-136 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 391 / 5e-129 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT5G04940 186 / 4e-51 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 172 / 4e-46 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G35160 156 / 3e-40 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 155 / 7e-40 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G13960 153 / 8e-40 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT1G17770 136 / 9e-34 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 132 / 2e-32 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G05900 120 / 4e-30 SUVH10, SDG11 SU\(VAR\)3-9 HOMOLOG 10, SET domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023714 [exp] 795 / 0 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10029470 [exp] 194 / 5e-54 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 184 / 2e-50 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 184 / 2e-50 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10011011 [exp] 160 / 2e-41 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 150 / 4e-38 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10041515 [exp] 148 / 8e-38 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10008680 [exp] 137 / 2e-35 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Lus10031984 [exp] 139 / 9e-35 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064300 [exp] 533 / 0 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 531 / 0 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.001G036800 [exp] 196 / 9e-55 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 193 / 1e-53 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G188700 [exp] 192 / 2e-53 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 191 / 6e-53 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G083100 [exp] 159 / 4e-41 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.014G143900 [exp] 141 / 2e-35 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.002G237950 [exp] 139 / 9e-35 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.012G115500 [exp] 114 / 1e-26 AT2G35160 172 / 3e-46 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10014457 pacid=23176841 polypeptide=Lus10014457 locus=Lus10014457.g ID=Lus10014457.BGIv1.0 annot-version=v1.0 ATGAAGGTACCCAAAATCGAACCAAAGCTGGAACCACTGGAGGAGAGCCCACTCGAAATCCAGCAGCTCCTTCAAGAGCAACCAGACTCTTACTTCCAAG ACTCAATCCCTTTGAACTTCTACTCCAATTCTCAAAGCACACCTCCATCTCAATCCGCCCTTGTCCCCGCCGCAGACAATAATGTCTATTCCGAGTACTA CCGAATCTCGGAGCTCTTCCGGACAGCTTTTGCCAAACGGGTAGAGGAAGAGCAGCAGCAGCAGCAGCAGCAGAATCAACAGTACGGAGACACCTCGGTC CCGGACCCAGACGCTCAAGCGATTGTGCCCATCAACGCTGATAACCAGGTGTCTTCCACTCCAGCCCCCAAGGTTCAGCGGAAGTACCCGAAGCGATCAT CGGAGCTTGTCCGGGTCACGGACCTTCAGATTGAGGATAAGAGGTATTTCAGGGACCTGGTCCGGAGCACTCGTTTGGTGTTCGACTCGTTTCGAATATA CGCTGTGGAGGCGGAAGCGAAGCGTCGAAACGCATTGGGAGCCTTGTTCAGAAAGCCTCGTGGGGATCTACTAGCTGCATCCGTTATGAGGGACCGTGAT CTTTGGATCAATCGTGATAAGCGAATTGTGGGTTCTATTCCTGGTATCGAGATCGGAGATGTCTTTTTCTTCAGGATGGAATTGTGTGTGCTTGGGGTTC ATGGCCAACCTCAGGCTGGAATTGACTACCTCCCTGGGAGCCAAAGCTCAAATGGGCAGCCAATTGCTACGGGTATTATTGTTTCTGGTGGCTACGAGGA CGATGAGGACGCTGGAGATGAGATAACTTATACTGGGCATGGAGGCCAGGATAAGTTTGGGAAGCATTGTGTAAATCAAAAGCTTGAAGGTGGGAACTTA GCGATGGAGAGGAGCATGCATTATGGAATTGAAGTAAGGGTTGTTAGAGGGTTTAAGTATGAAGGGAGTATTAGTAGCAAGATTTATGTCTATGATGGTT TATACAGGATTTACCAGTACTGGTTTGATATAGGTAAATCTGGTTTTGGTGTCTATAAGTTTAAGCTGTCTAGGATACAAGGACAGGAGCAAATGGGTAG TGCCATCCTAAAATTTGCTGGGAGTTTGCGGACTAAGCCATTGAGCGTGAGGCCAACTGGGTATTTACGACTTGATCTCTCAAAAGGATTAGAACATATG CCTGTCATGGTGTTCAACGATATTGATAACTTTGGCGATCCTGTTTATCATGACTATCTTGCGAAGACTGTGTTTCCTCCTCACTTGTGTAACCCTGGAA GTAGTGGAACTGGTTGCGAATGTGTTTCGGGTTGCGTGGATGGCTGTTTTTGCGCAATGAAGAATGGTGAATGGGGAGACTTATCTCGGATATATCCCGA TTATGTGCGCCCAACATATCCCTCTCTTCCGCCTTTGGATTTTGCAATGGATGTATCTAGAATGAGGAATGTTGCTTGTTACATGAGCCATAGCACTGCT CCTAATGCGATGGTGCAGTTTGTACTGTATGATCATAACAATCTGATGTTCCCCCACCTTATGATATTTGCTATTGAGAACATTCCTCCTTTGCGGGAGA TAAGTCTTGACTATGGGGTAGCAGATGATGCGACCGCTAAGCTTGCCATTTGCAATTGA
AA sequence Show only first row Show all	>Lus10014457 pacid=23176841 polypeptide=Lus10014457 locus=Lus10014457.g ID=Lus10014457.BGIv1.0 annot-version=v1.0 MKVPKIEPKLEPLEESPLEIQQLLQEQPDSYFQDSIPLNFYSNSQSTPPSQSALVPAADNNVYSEYYRISELFRTAFAKRVEEEQQQQQQQNQQYGDTSV PDPDAQAIVPINADNQVSSTPAPKVQRKYPKRSSELVRVTDLQIEDKRYFRDLVRSTRLVFDSFRIYAVEAEAKRRNALGALFRKPRGDLLAASVMRDRD LWINRDKRIVGSIPGIEIGDVFFFRMELCVLGVHGQPQAGIDYLPGSQSSNGQPIATGIIVSGGYEDDEDAGDEITYTGHGGQDKFGKHCVNQKLEGGNL AMERSMHYGIEVRVVRGFKYEGSISSKIYVYDGLYRIYQYWFDIGKSGFGVYKFKLSRIQGQEQMGSAILKFAGSLRTKPLSVRPTGYLRLDLSKGLEHM PVMVFNDIDNFGDPVYHDYLAKTVFPPHLCNPGSSGTGCECVSGCVDGCFCAMKNGEWGDLSRIYPDYVRPTYPSLPPLDFAMDVSRMRNVACYMSHSTA PNAMVQFVLYDHNNLMFPHLMIFAIENIPPLREISLDYGVADDATAKLAICN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33290		SDG3, ATSUVH2, ...	SET DOMAIN-CONTAINING PROTEIN ...		Lus10014457 [exp]	0	1
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Lus10023714 [exp]	1.0	0.9137
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10037145 [exp]	3.9	0.8872
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	6.5	0.9007
AT1G79090			unknown protein		Lus10031788 [exp]	6.7	0.8737
AT1G35660			unknown protein		Lus10006047 [exp]	7.7	0.8443
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	9.9	0.8467
					Lus10005528 [exp]	11.2	0.8556
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	12.2	0.8815
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10011379 [exp]	14.1	0.8183
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	15.2	0.8510

Compare expression of checked genes

Lus10014457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.