Plant FIBer expression Database

Lus10014458 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04555 141 / 1e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023715
[exp]
227 / 1e-77 AT1G04555 170 / 3e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G173000
[exp]
161 / 6e-51 AT1G04555 174 / 8e-56 unknown protein
Potri.010G064500
[exp]
155 / 3e-49 AT1G04555 158 / 2e-50 unknown protein
Potri.014G031900
[exp]
49 / 3e-07 AT4G33380 331 / 3e-113 unknown protein
Potri.002G127700
[exp]
48 / 4e-07 AT4G33380 300 / 8e-101 unknown protein
PFAM info
Representative CDS sequence
>Lus10014458 pacid=23176867 polypeptide=Lus10014458 locus=Lus10014458.g ID=Lus10014458.BGIv1.0 annot-version=v1.0
ATGGATATACAACAGCCATGGCGAACGAGATTATCGTTTAATAGCGCCACCATCTTACTCACTGTGCTCAATGTCGTCACTGTCCTTTTCTTTCTGCAGA
GCTTTCTCTCCGGTGCTTCTCCCCGCATCCGATCCTCTTCTTCTAACCAATTCACTCCAGTTCAACTAAGATACATCAAAGAATCTGAAGAGATCCGCCT
TGCCATGCAACCTTGGGACCTTATAAAAAGGGTGAAGGAAATTCAGCAAGAATCTTTTGCAAAACCTGAAACGGTTCAGCAGAAAGAGACTCCGACACAA
ACAGCTGCTGTTGATCTCTCGAAAAGGCTAAAGGATCTCCGCACTCTCAATGACGGCGCTAGCACCAAAGCTTTAGAAGAATGGCGGAAGAGGAAGATGG
AGCGAGCAAGACAGCGGGAAATGGAGAAAAATGGTACTGTCACCTCTCAAGTTTAG
AA sequence
>Lus10014458 pacid=23176867 polypeptide=Lus10014458 locus=Lus10014458.g ID=Lus10014458.BGIv1.0 annot-version=v1.0
MDIQQPWRTRLSFNSATILLTVLNVVTVLFFLQSFLSGASPRIRSSSSNQFTPVQLRYIKESEEIRLAMQPWDLIKRVKEIQQESFAKPETVQQKETPTQ
TAAVDLSKRLKDLRTLNDGASTKALEEWRKRKMERARQREMEKNGTVTSQV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G04555 unknown protein Lus10014458
[exp]
0 1
AT1G03950 VPS2.3 vacuolar protein sorting-assoc... Lus10033914
[exp]
1.7 0.9484
AT5G39510 ZIG1, SGR4, ATV... SHOOT GRAVITROPSIM 4, VESICLE ... Lus10034696
[exp]
2.6 0.9545
AT5G20090 Uncharacterised protein family... Lus10038250
[exp]
2.8 0.9488
AT4G10170 SNARE-like superfamily protein... Lus10002944
[exp]
4.2 0.9403
AT3G45310 Cysteine proteinases superfami... Lus10034895
[exp]
4.2 0.9350
AT5G62570 Calmodulin binding protein-lik... Lus10043463
[exp]
4.4 0.9267
AT5G45110 ATNPR3, NPR3 NPR1-like protein 3 (.1) Lus10018289
[exp]
5.1 0.9295
AT1G25520 Uncharacterized protein family... Lus10034293
[exp]
5.2 0.9223
AT1G34750 Protein phosphatase 2C family ... Lus10033453
[exp]
5.4 0.9218
AT4G31720 STG1, TAFII15, ... TBP-ASSOCIATED FACTOR 10, SALT... Lus10034375
[exp]
5.7 0.9365

Lus10014458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.