Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13450 190 / 5e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT2G03720 80 / 1e-18 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03290 76 / 3e-16 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT5G17390 72 / 4e-15 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G69080 70 / 2e-14 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT1G44760 69 / 3e-14 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032598 [exp] 328 / 4e-115 AT4G13450 177 / 7e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10043152 [exp] 323 / 4e-113 AT4G13450 178 / 4e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10023716 [exp] 253 / 5e-87 AT4G13450 136 / 2e-41 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10019173 [exp] 81 / 1e-18 AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10034661 [exp] 66 / 7e-13 AT5G17390 160 / 3e-48 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10007982 [exp] 63 / 1e-11 AT5G17390 149 / 1e-43 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10025644 [exp] 57 / 6e-10 AT1G44760 211 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10029664 [exp] 54 / 1e-08 AT1G44760 236 / 2e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10042701 [exp] 52 / 3e-08 AT1G44760 235 / 6e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064800 [exp] 216 / 2e-71 AT4G13450 194 / 4e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.008G109000 [exp] 90 / 9e-22 AT1G69080 196 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.T170801 [exp] 89 / 3e-21 AT1G69080 196 / 3e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.010G140200 [exp] 87 / 6e-21 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G060700 [exp] 82 / 4e-19 AT3G03290 198 / 2e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G084600 [exp] 61 / 4e-11 AT1G44760 200 / 5e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.005G177100 [exp] 54 / 1e-08 AT1G44760 226 / 3e-75 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10014459 pacid=23176860 polypeptide=Lus10014459 locus=Lus10014459.g ID=Lus10014459.BGIv1.0 annot-version=v1.0 ATGGGAAGCGACACAGCGATGAGGAAAGTTATGGTGGTTGTTGACCCCAGCAGGGAAGCTGCAGGGGCTCTTCAGTACGCTCTTTCTCACGTCGTCACCG AGAAAGACGAGCTCATCTTGGTCCATGTCGAGACCCAGAACTCATGGAAGAACACCTTCTCGTTTTCCTTCCTCCCCCGCTCCGGCATCTCCATCCCTGC CCTCAACAATAGCAATGGCAATAACAACAGCAGCAACAACAATAATAATAATAATTACCAGTCATCAGCAGCAACGGGAGCTGATGGAATGGCAGAAGGG GAGGTTGATTTCTTGGAAGCAATGAAGCAGCTTTGCGAGGTGGCGAGGCCTAGGGTGAGGGTGAAGGTTGAGAGGGTTCAGATGGGAGCTAAAGACAAGG CAAGTGTCATCCTTTTCAAGAGCACCTCCATGGCTGTTGATCATCTCATCATTGGCCAGAAGAAGAGCCTCTCCAGCGTCTTGTTAGGGAACACCAAATA CAAGAAACCAGGAGGGTTAGGGCCAAAGTCGTTGGACACTGCAGAGTATTTGATCGAGTACAGCAAGTGCAATTGTGTCGGAGTCCAGAAAAAGGGGCAA ACTGGAGGTTATCTACTCAATACCAAGACCCAGAAGAATTTCTGGCTTCTCGCTTAA
AA sequence Show only first row Show all	>Lus10014459 pacid=23176860 polypeptide=Lus10014459 locus=Lus10014459.g ID=Lus10014459.BGIv1.0 annot-version=v1.0 MGSDTAMRKVMVVVDPSREAAGALQYALSHVVTEKDELILVHVETQNSWKNTFSFSFLPRSGISIPALNNSNGNNNSSNNNNNNNYQSSAATGADGMAEG EVDFLEAMKQLCEVARPRVRVKVERVQMGAKDKASVILFKSTSMAVDHLIIGQKKSLSSVLLGNTKYKKPGGLGPKSLDTAEYLIEYSKCNCVGVQKKGQ TGGYLLNTKTQKNFWLLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	1.4	0.9182
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	3.2	0.9000
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	5.2	0.8774
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	6.5	0.8546
					Lus10029449 [exp]	6.5	0.8587
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	6.6	0.8359
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	6.9	0.8687
AT2G22560			Kinase interacting (KIP1-like)...		Lus10012730 [exp]	7.2	0.8315
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	8.0	0.8494
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	8.9	0.8628

Compare expression of checked genes

Lus10014459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.