Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24315 352 / 1e-122 ATSEC20 Sec20 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023717 [exp] 543 / 0 AT3G24315 393 / 8e-139 Sec20 family protein (.1) Lus10014461 [exp] 218 / 9e-72 AT3G24315 169 / 4e-53 Sec20 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064900 [exp] 377 / 3e-132 AT3G24315 249 / 8e-82 Sec20 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF03908 [flax] [poplar] Sec20 Sec20
Representative CDS sequence Show only first row Show all	>Lus10014460 pacid=23176856 polypeptide=Lus10014460 locus=Lus10014460.g ID=Lus10014460.BGIv1.0 annot-version=v1.0 ATGGACGAGGTGGTAGAAGCAGTAGAGAAAGCGAAGCAGGAATGGGACGAAGCGTATGCCTCCATGCAAGTCCACATTAAATCGATTCAAGAGTACGGCA AATCCAGAGATGATGGTGATGGACAGGGAAAGAATTCCCTTCCCAGATTGAATGGCCTTGCGCAAGATGGATTAGCTCTCCTCCAATCGCTGGAATTCAA GCTTGATCTCTTGGCTCCCCAGTTGCCCACTGACGATCAAGTTAAATCCACGCAGTCGCTCTTCGAATCCTGGAAGAAACAGTCTCACAGTTTGAGGCTG AGTTTGAGGAACGCTAATTTGCAAGCAAAGGCTAATATGAGGAAGGCTGCGCAGGAAGAGAGAGAACTGCTTTTAGGAGGCGGGGAAGAATCCACAGTCC GCAGGAGAAATCTTCAGACAAAAGCTGGGATGACATCTGCAGCAGAAAGCATCACAGAGAGCCTCAGACGTACTCGACAGCTGATGGTTCAGGAAGTGGA AAGGAGTTCTAACACACTTATGACTTTTGACGAATCAACGGGGGTATTAAGAAAGGCTGAAAGTGAATATAAGGGTCATCGATCATTGTTGATGCGAACG CGAAACCTACTTTCCACAATGCAAAGACAGGATGTTATTGACAGGGTGATAATTGCAGTGGGGTTTATCTTGTTCTCTTGTGCTGTTCTGTATGTGGTGT CCAAGCGCGTTGGAATACTTAGGCTACAGAGAACGGTCACTGCTGCAATTAAGGCTGGCATGGCTGGGAAAGGGGACTTCAGACGTGAAGCAGTTGAAGA TGGTCTAAAAAATCTAGCTCAAACGCACAAAAATCCAGATGCCCAAATGCAGGCACTGCTTAAGCAGCCTATGCACGACGAGCTGTAG
AA sequence Show only first row Show all	>Lus10014460 pacid=23176856 polypeptide=Lus10014460 locus=Lus10014460.g ID=Lus10014460.BGIv1.0 annot-version=v1.0 MDEVVEAVEKAKQEWDEAYASMQVHIKSIQEYGKSRDDGDGQGKNSLPRLNGLAQDGLALLQSLEFKLDLLAPQLPTDDQVKSTQSLFESWKKQSHSLRL SLRNANLQAKANMRKAAQEERELLLGGGEESTVRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSSNTLMTFDESTGVLRKAESEYKGHRSLLMRT RNLLSTMQRQDVIDRVIIAVGFILFSCAVLYVVSKRVGILRLQRTVTAAIKAGMAGKGDFRREAVEDGLKNLAQTHKNPDAQMQALLKQPMHDEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014460 [exp]	0	1
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	1.0	0.8872
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10027130 [exp]	3.9	0.8343
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	4.0	0.8573
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	6.3	0.8504
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	7.1	0.8605
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10013592 [exp]	7.2	0.8412
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	9.9	0.8639
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	10.6	0.8556
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	11.3	0.8341
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	12.6	0.8568

Compare expression of checked genes

Lus10014460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.