Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24315 154 / 3e-47 ATSEC20 Sec20 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014460 [exp] 222 / 6e-74 AT3G24315 393 / 8e-139 Sec20 family protein (.1) Lus10023717 [exp] 216 / 9e-72 AT3G24315 393 / 8e-139 Sec20 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064900 [exp] 131 / 3e-38 AT3G24315 249 / 8e-82 Sec20 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014461 pacid=23176844 polypeptide=Lus10014461 locus=Lus10014461.g ID=Lus10014461.BGIv1.0 annot-version=v1.0 ATGGACGAGGTGGTAGAAGCAGTAGAGAAAGCGAAGCAGGAATGGGACGAAGCGTATGCCTCCATGCAAGTCCACATTAAATCGATTCAAGAGTACGGCA AATCCAGAGATGATGGTGATGGACAGGGAAAGAATTCCCTTCCCAGATTGAATGGCCTTGCGCAAGATGGATTAGCGCACCTCAAATCGCTGGAATTCAA GCTTGATCTCTTGGCTCCCCAGTTGCCCACTGACGATCAAGTTAAATCCACGCAGTCGCTCTTCGAATCCTGGAAGAAACAGTCTCACAGTTTGAGGCTG AGTTTGAGGAACGCTAATTTGCAAGCTAAGGCTAATATGAGGAAGGCTGCACAGGAAGAGGTACTGTATCTTTGTTACTCATTTTGCTTGAGAGAATGA
AA sequence Show only first row Show all	>Lus10014461 pacid=23176844 polypeptide=Lus10014461 locus=Lus10014461.g ID=Lus10014461.BGIv1.0 annot-version=v1.0 MDEVVEAVEKAKQEWDEAYASMQVHIKSIQEYGKSRDDGDGQGKNSLPRLNGLAQDGLAHLKSLEFKLDLLAPQLPTDDQVKSTQSLFESWKKQSHSLRL SLRNANLQAKANMRKAAQEEVLYLCYSFCLRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014461 [exp]	0	1
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10008769 [exp]	3.5	0.8176
AT5G50350			unknown protein		Lus10033401 [exp]	5.0	0.8497
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020051 [exp]	14.1	0.7900
AT4G18490			unknown protein		Lus10021779 [exp]	14.1	0.8136
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10034138 [exp]	17.3	0.8207
AT4G22758			unknown protein		Lus10000386 [exp]	18.5	0.8266
AT5G20120			unknown protein		Lus10019426 [exp]	19.1	0.8118
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	21.7	0.8017
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	32.4	0.7475
AT5G56460			Protein kinase superfamily pro...		Lus10013406 [exp]	36.3	0.7949

Compare expression of checked genes

Lus10014461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.