Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24320 1507 / 0 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT4G02070 124 / 2e-28 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G24495 112 / 1e-24 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT5G54090 98 / 2e-20 DNA mismatch repair protein MutS, type 2 (.1) AT4G25540 94 / 4e-19 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G18524 88 / 3e-17 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 81 / 2e-15 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT1G65070 79 / 2e-14 DNA mismatch repair protein MutS, type 2 (.1.2) AT3G20475 70 / 7e-12 ATMSH5 MUTS-homologue 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023718 [exp] 2169 / 0 AT3G24320 1594 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10010010 [exp] 114 / 4e-25 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10017724 [exp] 103 / 5e-22 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10005743 [exp] 100 / 7e-21 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10027452 [exp] 96 / 1e-20 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10032469 [exp] 92 / 2e-18 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10018187 [exp] 90 / 9e-18 AT1G65070 899 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10033095 [exp] 89 / 2e-17 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10025647 [exp] 88 / 3e-17 AT1G65070 892 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065000 [exp] 1691 / 0 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.014G121701 [exp] 118 / 2e-26 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G156314 [exp] 108 / 1e-23 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 108 / 1e-23 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.015G142900 [exp] 98 / 2e-20 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.012G005000 [exp] 88 / 2e-17 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Potri.004G041900 [exp] 86 / 8e-17 AT1G65070 924 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Potri.012G060000 [exp] 86 / 1e-16 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.001G156200 [exp] 81 / 3e-15 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 65 / 3e-10 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01624 [flax] [poplar] MutS_I MutS domain I CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V
Representative CDS sequence Show only first row Show all	>Lus10014462 pacid=23176862 polypeptide=Lus10014462 locus=Lus10014462.g ID=Lus10014462.BGIv1.0 annot-version=v1.0 ATGTACTGGCTAGCCAGTAGAAACTTTGTGGTTTCTCTACCCAAGTGTCGTTCGCCCTTCTCCCTCTTCTCCATCCTCCGCTCCCCTTCTTCCACCTACT GCTCCTTCAGTCACTCCCTTCCCACTCTCCATAGAAGGAGGGTTGGAGAAGGGGTTCAGTGCTTTAAAGATGTTAAGGTATCCAAGGGGAATTCAAGACC AACCAGGAAACTTAAGGCATTGGATGATGCTTTGGCTGAGAAGGACCTAACCCACTTATTGTGGTGGAAGGAGAAGCTGGAGAACTGCAGGAAGCCTTCT ACTCTTCATCTTATCAATAGGCTTGTGTACACCAATTTGTTGGGCGTGGATGCAAACCTAAGAAATGGGAGTTTGAAGGAAGGAAATCTAAATTGGGAAA TGTTACAGTTCAAGTCCAGATTTCCGCGTGAGGTTTTGCTATGCAGAGTTGGAGATTTTTATGAATCTGTTGGGGTAGATGCTTGCATTCTTGTGGAATA CGCTGGGTTAAACCCGTTTGGAGGATTGCGTTCTGATAGCATTCCTAAAGCTGGCTGCCCAGTTGTGAACCTTCGGCAAACTTTAGATGACTTGACAAGG AACGGGTACTCAGTATGCATAGTGGAAGAAGTTCAAGGTCCAACGACAGCTCGTTCTCGGAAAGATCGTTTTATATCTGGGCATGCCCATCCTGGTAGTC CATATGTATTTGGACTTGTTGGTGCTGATCATGATCTGGACTTTCCTGAACCAATGCCTGTAGTTGGTATATCACATTCAGCTAGGGGTTATTGCATGAC ATCTGTCTTAGAAACTATGAAAACATATTCCTTAGAGGATGGTTTAACAGAAGAAGCATTGGTTGCCAAACTGCGCACATGTCAGTACCATCATCTGTTC CTTCACAAATCATTGAAACACAACCCCTCAGGAACTTCTCGCTGGGGAGAATTTGGTAAGGGTGGCTTGGTGTGGGGGGAATGTAGCTCTCGACACTTTG AGTGGCTTGAAGGTGATCCTGTGTCCGAGTTATTGCTTAAGGTCAGTGAGCTTTATGGACTCGGTGATGAAGTTGCATTCCGAAATGTCACTGTGTTGTC GGACAGCAGGCCTCGGTCTCTACATCTTGGAACAATTCTGTCTTATGCTTATAAACATCGTTTATTCGCAGCAACATGTAAACTCATGAGCAATGTCACA TGCTCAATCCCAGACTTCACTTGTATTTCATCTGCAAAGCTGGTGAAGCTGCTTGAACAGAGGGAAGCCAATCATTTGGAATTTTGCAGAATAAGAAATG TTGTGGACGAAGTATTGCAGATGTACAGAAACCCGGAGCTTAATGGTATTTTGAAATCTCTGATGGATCCTACATGGGTAGCCACTGGATTGAAAATTGA CTTTGAGAGGCTTGTTGATGAATGCAAACTGGTTTCTGGTAGAATTTGCGAAATGATATCTCTTGATGGAGAGAATGACAACAAAATAAGTAGCTCTTCT GTCATTCCACGTGAATTCTTTGAAGAAATGGAATCTTGTTGGAAAGGACGTGTAAAGAGAGTTCACATGCATGAGGAATTTGCAGAAGTAGAAACGGCAG CCCAGGCCTTGTCATTGGCAGTCAATGAAGATTTCATTCCAATTATATCAAGAATTAAAGCAACAACTGCCCCCTTTGGTGGACCAAAGGGTGAAATACT ATATGCTCGAGAACATGGATCTGTTTGGTTTAAGGGAAAAAGGTTTGCACCAGCCGTATGGGCTGGTACTCTAGGAGAAGAGCAGATTAAACAGCTTAAA GGTGCTATAGATTCGAAAGGCAGAAAAGTTGGTGATGAATGGTTTACTACTATGAACGTGGAAGATGCTTTAGCAAAGTACCACGAAGCAGGTGAGAAGG CTAAATCAAAGGTCTTGGAGTTGCTCAGGGGACTTTCTGCCGAGTTGCAAACAAAGATCAACGTCCTTGTCTTTGCTTCAATGTTACTTGTTATCGCAAA GGCATTGTTTGCTCATGTGAGTGAAGGGAGGCGTAGGAAATGGGCCTTTCCGTCTCTTGTTAGGTTTGATAATCCTAAGGCTTTGATTTCTTCGGAAGGT GCACAAGCATATCACATGAAGTTGATTGGCTTAACTCCATACTGGTTCGATGTGGCAGAAGGTGGTGCTGTATACAACACAGTAGACATGCAGTCGTTGT TTCTGTTGACAGGGCCAAATGGTGGTGGTAAATCCAGCTTGCTTCGATCAATTTGTGCTTCTGCTTTACTTGGTATATGTGGATTTATGGTGCCTGCAGA ATCAGCAGTGATTCCTCAGTTTGATGCTATTATGCTGCACATGAAATCATACGACAGTCCTGCAGATGGGAAAAGTTCATTTCAGGTAGAAATGTCCGAA ATCCGCTCTATTCTGAGTGGATCGACATCAAAAAGCCTTGTCCTCGTGGATGAAATATGCCGAGGGACTGAAACAGCCAAGGGAACATGCATTGCTGGAA GTATTATTGAGAGACTTGATAAAATTGGTTGTTTGGGTATTATTTCTACTCATCTCCATGGAATATTTGATTTGCCACTGAATACCAAGAACACTGTTCA TAAAGCAATGGGAACTGAATACGTTGATGGACAACCGAAACCAACCTGGAGGCTGATAGATGGCATATGTCGGGAGAGCCTAGCTTTTGAAACAGCCAAG ATCGAAGGAATCCCCGACTCCGTACTCCAAAGAGCAGAAAGCTTGTACTTGTCAGCTTATCCTATAGGTGGGCATTCAGCAGAGGATACAAAGCCAGGAC AGTTTTCGTGCGGTGGAGAAGCTAACGATTCCGGTGAAGCTAATCCTTCATCTAATGGATCTGAAACAGGAAATCTTGATCATGATATTGATTCAACTAG AAAAAACAGATTATCAAACCGCAAAGATGTTGAGAGTGCCGTCACGATAATATGCCAGAGGAGGCTGATTGAGCTGTACAAGCAGAGGGACATTTTGGAT GTCCAAGTGGTGCATTGTGTAGCCATTGATGCTAGGCAACAGCCACCACCATCTACAATTGGTGCTTCAGCAGTATACGTAATGTTGAGACCGGACAAGA AACTATACGTTGGAGTGGTAATTTTGTTTTTGAGCTCCCCGTTGCTCTTTTCGTTCACTCTCATATTCATGCTGCAGAATCCTAATCAGTTTTTCTCCGG TGATTCTGCCAAACAGACAGATGATCTTGAAGGAAGAGTCCGAGCCCATCGTGGAAAGGAGGGACTGCAGAATGCCTCTTTTCTTTACTTGATAGTACCA GGAAAGAGCATTGCCTGCCAGCTTGAGACACTTCTCATCAACCAGCTCCCTAGCAGAGGTTTCCAGCTTTCAAATGTTGCAGATGGTAAACATCGGAATT TCGGCACAAGCAATCTGTCTTTAGAAAGTGATTGTTCCTTAGTTCACTGA
AA sequence Show only first row Show all	>Lus10014462 pacid=23176862 polypeptide=Lus10014462 locus=Lus10014462.g ID=Lus10014462.BGIv1.0 annot-version=v1.0 MYWLASRNFVVSLPKCRSPFSLFSILRSPSSTYCSFSHSLPTLHRRRVGEGVQCFKDVKVSKGNSRPTRKLKALDDALAEKDLTHLLWWKEKLENCRKPS TLHLINRLVYTNLLGVDANLRNGSLKEGNLNWEMLQFKSRFPREVLLCRVGDFYESVGVDACILVEYAGLNPFGGLRSDSIPKAGCPVVNLRQTLDDLTR NGYSVCIVEEVQGPTTARSRKDRFISGHAHPGSPYVFGLVGADHDLDFPEPMPVVGISHSARGYCMTSVLETMKTYSLEDGLTEEALVAKLRTCQYHHLF LHKSLKHNPSGTSRWGEFGKGGLVWGECSSRHFEWLEGDPVSELLLKVSELYGLGDEVAFRNVTVLSDSRPRSLHLGTILSYAYKHRLFAATCKLMSNVT CSIPDFTCISSAKLVKLLEQREANHLEFCRIRNVVDEVLQMYRNPELNGILKSLMDPTWVATGLKIDFERLVDECKLVSGRICEMISLDGENDNKISSSS VIPREFFEEMESCWKGRVKRVHMHEEFAEVETAAQALSLAVNEDFIPIISRIKATTAPFGGPKGEILYAREHGSVWFKGKRFAPAVWAGTLGEEQIKQLK GAIDSKGRKVGDEWFTTMNVEDALAKYHEAGEKAKSKVLELLRGLSAELQTKINVLVFASMLLVIAKALFAHVSEGRRRKWAFPSLVRFDNPKALISSEG AQAYHMKLIGLTPYWFDVAEGGAVYNTVDMQSLFLLTGPNGGGKSSLLRSICASALLGICGFMVPAESAVIPQFDAIMLHMKSYDSPADGKSSFQVEMSE IRSILSGSTSKSLVLVDEICRGTETAKGTCIAGSIIERLDKIGCLGIISTHLHGIFDLPLNTKNTVHKAMGTEYVDGQPKPTWRLIDGICRESLAFETAK IEGIPDSVLQRAESLYLSAYPIGGHSAEDTKPGQFSCGGEANDSGEANPSSNGSETGNLDHDIDSTRKNRLSNRKDVESAVTIICQRRLIELYKQRDILD VQVVHCVAIDARQQPPPSTIGASAVYVMLRPDKKLYVGVVILFLSSPLLFSFTLIFMLQNPNQFFSGDSAKQTDDLEGRVRAHRGKEGLQNASFLYLIVP GKSIACQLETLLINQLPSRGFQLSNVADGKHRNFGTSNLSLESDCSLVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	0	1
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10023718 [exp]	1.4	0.9168
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10034355 [exp]	1.7	0.9160
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	2.2	0.9234
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038291 [exp]	4.0	0.9042
AT3G10310			P-loop nucleoside triphosphate...		Lus10031058 [exp]	6.6	0.9002
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	8.8	0.9050
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	9.2	0.8853
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	10.6	0.8974
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	12.6	0.9079
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	12.8	0.8745

Compare expression of checked genes

Lus10014462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.