Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13430 678 / 0 ATLEUC1, IIL1 isopropyl malate isomerase large subunit 1 (.1) AT4G26970 59 / 7e-09 ACO2 aconitase 2 (.1) AT2G05710 55 / 1e-07 ACO3 aconitase 3 (.1) AT4G35830 53 / 4e-07 ACO1 aconitase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032620 [exp] 768 / 0 AT4G13430 772 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10043129 [exp] 761 / 0 AT4G13430 852 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10021533 [exp] 66 / 5e-11 AT2G05710 1523 / 0.0 aconitase 3 (.1) Lus10040070 [exp] 62 / 8e-10 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10015116 [exp] 62 / 1e-09 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 61 / 3e-09 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 60 / 3e-09 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 60 / 5e-09 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10041858 [exp] 54 / 4e-07 AT4G35830 1695 / 0.0 aconitase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065100 [exp] 712 / 0 AT4G13430 850 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.008G172500 [exp] 613 / 0 AT4G13430 644 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.014G153400 [exp] 59 / 8e-09 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 56 / 8e-08 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.007G060900 [exp] 56 / 8e-08 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.005G108100 [exp] 55 / 1e-07 AT4G35830 1668 / 0.0 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10014463 pacid=23176859 polypeptide=Lus10014463 locus=Lus10014463.g ID=Lus10014463.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTACCATTGCCTCTCCTTCCACATCCTTCCTTCCCGGCAAGGAACTGGGTCGCTCAGTTTTCGCCCAACCACCCTCCTCTATCTCGGTTC CCAAATGCAGGAATTCGATCTCCAAGAAAATTGTTTCCGTCATGGCTCCACATCAATCAGAGCGCAAGCCTTCAACTACTGGCACGGTGAAGACTGCTAT GACAATGACAGAAAAAATCTTGGCTATGGCTGCAGAGAAGTCCCAGTTGAGCCCCGGTGAAAATGTTTGGGTCAATGTTGATGTCTTGATGACCCATGAT GTTTGCGGCCCTGGTTCTTTTGATATCTTCAAGAAAGAGTTTGGGCAGAATGCTAAGGTTTGGGATCGTGAGAAGATTGTGGTGATACCTGAACATTACA TATTCACCAACGACAAACGTGCGAATAGGAATGTGGATATCTTGAGAGAATTCTGCACGGAGCAAAACATTAAGTACTTCTATGACATTCAGGACCGTGC TAATTTTAAGGCTAACCCTGATTACAAGGGTGTCTGCCATATTGCCCTTGCACAAGAGGGTCACTGCCGACCTGGCGAGGTCTTGTTGGGTACAGACTCA CACACCTGTACTGCTGGGGCATTTGGGCAATTTGCCACTGGAATTGGCAACACTGACGCTGGATTTGTCTTAGGCACTGGGAAGGCCTTGCTTAAGGTCC CCCCAACATTAAGGTTCGTAATGGATGGTGAAATGCCTGACTGTATACTTGCTAAGGATTTGATTTTGCAAATGGGAGAGCGTATGACTTTGTGTAACAT GGTTATCGAAGCTGGAGGAAAGAATGGTGTTGTGCCTGCTGACAACACTACTTTTAATTATCTTGAGGACAAGGTATCTGTTCCCTATGAGCCAGTTTAC AGTGACCAACAAGCAAGATATTTATCAGAGTATAGATTTGATGTTTCAAAATTGGAGCCACTAGTTGCTAAGCCCCATTCTCCTGATAACCGAGCTTTAG CAAGAGAGTGCAAAGATGTCAAGATTGACAGAGTATATATTGGATCTTGTACTGGAGGAAAAACTGAGGATTTTATGGCTGCGGCAAAAGTTTTTTTAGC TTCTGGATATAAGAAGGTCAAAGCACCCACTTTCCTTGTCCCTGCTACTCAAAAGGTATGGATGGACGTTTACAGTCTCCCAGTACCGGGGTCTGGTGGT AAGACATGCTCCCAGATTTTCGAGGAAGTCGGTTGTGACACACCTGCAAGTCCCAGCTGCGGGGCTTGTTTGGGCGGCCCTAAAGATACTTATGGACGTT TGAACGAGCCTAAGGCAAGTTATCCAAAGGAGAGAGTTAAATCAGAGCGAGAGGGAGTTAGGAACCGCAGCTGCGATCGCAATCTAGGAAGGAGATCGAG CTCCATCGATCGAAGAGTTTTAGGAGATGGCGATCAATGGAGGAAGTCAGTCACTGAGGTCGTCGACGACGGAGCAACATCGATAGGAGGATGTGACACA GATCCAGAGACGGCAGCCGCCAGGACCATGTTCCAAGAAAGTTGGAGGTTGACGGCGGTGAGCCCTTCGTCGGAGAAGACGAGTGATTAG
AA sequence Show only first row Show all	>Lus10014463 pacid=23176859 polypeptide=Lus10014463 locus=Lus10014463.g ID=Lus10014463.BGIv1.0 annot-version=v1.0 MASSTIASPSTSFLPGKELGRSVFAQPPSSISVPKCRNSISKKIVSVMAPHQSERKPSTTGTVKTAMTMTEKILAMAAEKSQLSPGENVWVNVDVLMTHD VCGPGSFDIFKKEFGQNAKVWDREKIVVIPEHYIFTNDKRANRNVDILREFCTEQNIKYFYDIQDRANFKANPDYKGVCHIALAQEGHCRPGEVLLGTDS HTCTAGAFGQFATGIGNTDAGFVLGTGKALLKVPPTLRFVMDGEMPDCILAKDLILQMGERMTLCNMVIEAGGKNGVVPADNTTFNYLEDKVSVPYEPVY SDQQARYLSEYRFDVSKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGYKKVKAPTFLVPATQKVWMDVYSLPVPGSGG KTCSQIFEEVGCDTPASPSCGACLGGPKDTYGRLNEPKASYPKERVKSEREGVRNRSCDRNLGRRSSSIDRRVLGDGDQWRKSVTEVVDDGATSIGGCDT DPETAAARTMFQESWRLTAVSPSSEKTSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10014463 [exp]	0	1
AT2G19940			oxidoreductases, acting on the...		Lus10003050 [exp]	3.5	0.9523
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	7.1	0.9629
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	8.6	0.9607
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	13.0	0.9561
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10008170 [exp]	13.3	0.9443
AT2G37500			arginine biosynthesis protein ...		Lus10003981 [exp]	15.7	0.9370
AT5G53850			haloacid dehalogenase-like hyd...		Lus10009198 [exp]	16.6	0.9439
AT2G03820			nonsense-mediated mRNA decay N...		Lus10025109 [exp]	16.8	0.9161
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	18.2	0.9303
AT1G02820			Late embryogenesis abundant 3 ...		Lus10008169 [exp]	20.1	0.9237

Compare expression of checked genes

Lus10014463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.