Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33310 223 / 4e-72 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3) AT1G04550 215 / 7e-69 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2) AT4G28640 172 / 5e-52 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT1G04100 141 / 7e-40 AUX_IAA IAA10 indoleacetic acid-induced protein 10 (.1) AT3G16500 125 / 6e-34 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT1G51950 123 / 4e-33 AUX_IAA IAA18 indole-3-acetic acid inducible 18 (.1) AT4G14550 118 / 2e-31 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT5G43700 115 / 4e-31 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT3G23050 116 / 1e-30 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT2G22670 116 / 6e-30 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023719 [exp] 481 / 3e-172 AT2G33310 223 / 4e-72 auxin-induced protein 13 (.1.2.3) Lus10022868 [exp] 170 / 2e-50 AT4G28640 198 / 1e-62 indole-3-acetic acid inducible 11 (.1.2.3) Lus10024958 [exp] 140 / 4e-39 AT4G28640 162 / 3e-48 indole-3-acetic acid inducible 11 (.1.2.3) Lus10039414 [exp] 128 / 4e-35 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10038285 [exp] 129 / 9e-35 AT3G16500 224 / 3e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10025817 [exp] 129 / 1e-34 AT3G16500 231 / 1e-74 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10038284 [exp] 129 / 4e-34 AT3G16500 223 / 6e-71 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10034962 [exp] 124 / 4e-33 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10042929 [exp] 119 / 1e-30 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172400 [exp] 309 / 7e-105 AT2G33310 246 / 4e-81 auxin-induced protein 13 (.1.2.3) Potri.010G065200 [exp] 306 / 7e-104 AT2G33310 243 / 4e-80 auxin-induced protein 13 (.1.2.3) Potri.002G256600 [exp] 196 / 7e-61 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.013G041400 [exp] 122 / 9e-33 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.003G048100 [exp] 124 / 1e-32 AT3G16500 224 / 4e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.005G053800 [exp] 120 / 1e-32 AT5G43700 239 / 7e-81 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Potri.008G161200 [exp] 121 / 2e-32 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.001G190300 [exp] 122 / 4e-32 AT3G16500 235 / 3e-76 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.010G078300 [exp] 120 / 5e-32 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.006G161400 [exp] 121 / 8e-32 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10014464 pacid=23176868 polypeptide=Lus10014464 locus=Lus10014464.g ID=Lus10014464.BGIv1.0 annot-version=v1.0 ATGGACGGCGGAGGTCTTTCTTTACTCGGCGGCGGCGGCGGCGGTTGTGGTGGGTTATCTAATAATTCCACCAATGTCTCCACGGCGGTGGATGCTGATC AGACCGATGACCACTTGGAGCTGGGTCTTGGTCTCAGCCTGGGTGGTGGCGGCGGCAGCGCTGGAAAGGGCAAATTAACAAATGGATGGGGCGAGTGTGG GAGAATCCTCACTGCCAAGGATTTTCCTTCTCATGGAAGCAACAAGAAGCCCAACCCTAATACTTCTATCTCTTGTTCCTCTAATTCCCCTTTTGGTAGT GGTGCTGCTACTAAGAAGAGAGCTGCTGACTCTGTCTCCCATGAAGGCGGAGGAGCATCCCCTACCTCTGCCAGCAGTCAGGTTGTTGGTTGGCCACCCA TTAGAGCTTACAGGATGAACAGCTTGGTCAACCTGGCTAAAGCGGCTAGAGGTGCTGAAGATGACAGCAACAACAGCAAGTCAGCTGCTGGTGGTGGTGG TAATGGTGAAAATGAGAAATCATCATCAAAGGATTCCAATTTGAAGAAAATTTTTTGCAATGGTGAAAAGACTGCTACTTGTGAAAAGGGTCATCATCTT GGGTTTGTGAAGGTGAACATGGATGGTGTCCCAATCGGAAGGAAGATAGATTTGAATGCTCATGGCTGTTATGAGACTCTGGCTCAAACATTGGAGGACA TGTTCTTCAGGTCCAACCCTGCTCTCAATTCCATAGGTGGCGAGAAGCAGCAACAAGCTTTGAAACCTTATATGCTTTTGGATGGATCCTCTGAATTTGT GCTGACTTATGAGGATAAAGATGGAGATTGGATGCTGGTTGGAGACGTCCCCTGGCAGATGTTCCTCAGCTCTGTGAAGAGGCTTCGGATCATGAGAACA TCTGAAGCTAATGGACTTGCAGCAGCAGCAGCAGCTCCTCCTAGGTTCGAAGAAAGGAGCGACAGACAAAGAAGCAAGCCTTCTTAG
AA sequence Show only first row Show all	>Lus10014464 pacid=23176868 polypeptide=Lus10014464 locus=Lus10014464.g ID=Lus10014464.BGIv1.0 annot-version=v1.0 MDGGGLSLLGGGGGGCGGLSNNSTNVSTAVDADQTDDHLELGLGLSLGGGGGSAGKGKLTNGWGECGRILTAKDFPSHGSNKKPNPNTSISCSSNSPFGS GAATKKRAADSVSHEGGGASPTSASSQVVGWPPIRAYRMNSLVNLAKAARGAEDDSNNSKSAAGGGGNGENEKSSSKDSNLKKIFCNGEKTATCEKGHHL GFVKVNMDGVPIGRKIDLNAHGCYETLAQTLEDMFFRSNPALNSIGGEKQQQALKPYMLLDGSSEFVLTYEDKDGDWMLVGDVPWQMFLSSVKRLRIMRT SEANGLAAAAAAPPRFEERSDRQRSKPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10014464 [exp]	0	1
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10023719 [exp]	1.0	0.9268
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Lus10005861 [exp]	8.4	0.9187
AT5G22400			Rho GTPase activating protein ...		Lus10004864 [exp]	8.7	0.8752
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	14.1	0.9083
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	16.1	0.8947
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10022785 [exp]	20.2	0.8606
AT3G08490			unknown protein		Lus10029519 [exp]	20.6	0.8939
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	25.7	0.8787
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10013968 [exp]	28.3	0.8617
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	36.4	0.8912

Compare expression of checked genes

Lus10014464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.