Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04540 228 / 2e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 228 / 2e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 169 / 1e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 140 / 3e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 118 / 3e-31 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G23950 62 / 6e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G40815 54 / 7e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G07310 47 / 2e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G45760 43 / 9e-05 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003570 [exp] 197 / 1e-59 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 195 / 8e-59 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002155 [exp] 127 / 2e-34 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008731 [exp] 125 / 2e-33 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10030501 [exp] 62 / 2e-10 AT2G40815 168 / 4e-49 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039259 [exp] 57 / 8e-09 AT5G23950 160 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027502 [exp] 56 / 1e-08 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10024505 [exp] 54 / 2e-08 AT2G45760 58 / 3e-10 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040692 [exp] 52 / 2e-07 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065300 [exp] 288 / 6e-94 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 265 / 1e-84 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 197 / 7e-60 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 193 / 2e-58 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G166400 [exp] 139 / 1e-38 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G458101 [exp] 72 / 1e-15 AT2G13350 74 / 1e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 66 / 6e-12 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G065500 [exp] 62 / 1e-10 AT2G40815 213 / 1e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G144600 [exp] 61 / 3e-10 AT5G23950 166 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 58 / 2e-09 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10014466 pacid=23176857 polypeptide=Lus10014466 locus=Lus10014466.g ID=Lus10014466.BGIv1.0 annot-version=v1.0 ATGTCTCGAATTTTGAACCCATTCCAGCTCCTTGAGCTCACTGTCATGTCGGCTCAGGACCTCCACCAGGCCTCCAGTAAGATGAAAACCTATGCTGTAG CCTGGATCCACCCAAACCGCAAGCTCTCCACCAGGGTCGACTCCTTGGGCCACAACCGACCCACATGGAACGACAAGTTTGTCTTTCGTGTAGACGAGGA ATTTCTTTATAGCGATACCTCTGCAATCACTATTGAGATCTACGCTGTCCACTGGTTTCGCGACGTACTCCTCGGTAGCGTCCGCGTTCTCATCGGCAGC GTCAACCCTCCGTCGCGACAAACCCACCAGAACAGCAATGTCCTATCCCTTGGCAATCGGTTCTTGGCTCTCCAAGTTCGGCGCGCATCGGGCCGTCCTC AGGGCATCATCAACGTTGGTGTCGCCATCCTCGATAGTTCCATGAGAAGTATGCCGCTATATTCTGGATCCTCCGCCGTTGGTTATCGCGATTTGATGGG ACAGAAAAACAATAATCGAAAAGGCGATCTGAGCAGCAATAGTAGCGATGCGGAAAGCAGTGACATGTACTCCATTCCTAACGATAAGCAATTCCTTCTT TCTTGGATCCCTACTCCAGAATTGAGGCGGACGAAAAGCGATTCCAGCTCTATGATGGATCTTCCACCGATGACCAAAGGTAAGAGAATCACCGGCGGGG GTTCCTTAGTAGGCGGACCTGCATACCGTAGGGGAAAATCAAAAGCCAGCTCCATGTTGACTGGGTTAGAGAGTTATCGGAATGGTGACTTTAACAAATT ACCCAAACAAGCCAATTCTCGATGCAGCCTATCAGAGATCGGAGGTTTGACGAAGAAGAAGCCAAATAATCGGATTCCCCTACCACCGGGGGCCAGATTC CTCAATGGGTCAGACACGAGCTCATCTGTTGATGGATTTTCCCCTTCCATGGTAAAGAAACCCATGGGTCGTCCTCCGATAACCGACTCAGAGCTTGGTC CATCGGCGTCGGAGGGTGGTGCCGTGACTGTGNNNNNNNNNNNACAGAAGACGCGGCGGTGTATGCAGGTAGTGAGCTAA
AA sequence Show only first row Show all	>Lus10014466 pacid=23176857 polypeptide=Lus10014466 locus=Lus10014466.g ID=Lus10014466.BGIv1.0 annot-version=v1.0 MSRILNPFQLLELTVMSAQDLHQASSKMKTYAVAWIHPNRKLSTRVDSLGHNRPTWNDKFVFRVDEEFLYSDTSAITIEIYAVHWFRDVLLGSVRVLIGS VNPPSRQTHQNSNVLSLGNRFLALQVRRASGRPQGIINVGVAILDSSMRSMPLYSGSSAVGYRDLMGQKNNNRKGDLSSNSSDAESSDMYSIPNDKQFLL SWIPTPELRRTKSDSSSMMDLPPMTKGKRITGGGSLVGGPAYRRGKSKASSMLTGLESYRNGDFNKLPKQANSRCSLSEIGGLTKKKPNNRIPLPPGARF LNGSDTSSSVDGFSPSMVKKPMGRPPITDSELGPSASEGGAVTVXXXXQKTRRCMQVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04540			Calcium-dependent lipid-bindin...		Lus10014466 [exp]	0	1

Compare expression of checked genes

Lus10014466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.