Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04530 168 / 6e-48 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 119 / 2e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 107 / 4e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 105 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 100 / 1e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29670 77 / 7e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 71 / 1e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 70 / 2e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000257 [exp] 804 / 0 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 752 / 0 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 157 / 9e-43 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 153 / 4e-42 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 121 / 8e-31 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 119 / 4e-30 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 100 / 6e-24 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002013 [exp] 102 / 7e-24 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 100 / 1e-23 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065400 [exp] 346 / 7e-116 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 322 / 4e-105 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 161 / 1e-44 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 121 / 5e-31 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 113 / 8e-28 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 111 / 3e-27 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 103 / 1e-24 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G254300 [exp] 98 / 7e-23 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 80 / 1e-15 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 78 / 4e-15 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014468 pacid=23176832 polypeptide=Lus10014468 locus=Lus10014468.g ID=Lus10014468.BGIv1.0 annot-version=v1.0 ATGCTGCTGAGGACCTCCTCAAGCTCAGGGATAAAAGGTTCTGTCTTTTCTGTTGTTTCAGAAAGCCCACTTGACATTCCCACTAGTAATTTCAGGCACT CCCCTTCTCACCTCAGCTTCCCACCACCGCAGCTTAACCAAGACAGTACTGGTGGTGAAAGAAGAAGAAGAAGAGGAGGGTTTAGAAGGGCTTGGTCTGA AAGTAACATTGATAGATTCACTGCTCCTTCTTGTGATTATTCTAAACAGCTACAGTCTCTAACTCCTAGGCGATATCCAACCAGAAAGAGGATGCTTCAC TCAGCTCCTTCCTTCTCCATCTTCACTGCCGATGAAGAAGAAGAGGGTGAACAAAAAGATGAGGGTTTGGTCAGAACTGTGACGATTGGGGAGAATATTG AGGAAGGTGGAGATTTCAGCTTTGGGAAGAGCATGGGGTTAATTGTTGAGGAAGGGGAAGAGACTGAACAACAACCAGAGGGAGATGAAAAAGATGATGG AGTGGGGAAGCTGGGTTTGATCTTCACTGGAGTTGTGACGACGAATCTTGGTGGAGTTGGAGATGAGGACGAACCTGCTAGCCCTCCCATGTATCTTGCT GCTGGGCTAGGGTTTGACAGTATTGATTTCCAGTCAGCTACTGGTGGAGATGCTGCTTCTTTGCTGGACTTTGATGAGACTGGTGATTTGGAAGAGTATT ACAGGAAGATGCTTGATCAATTCCCCAGCCACACTTTATTCCTCAGGAATTATGCTCATCTCTTGCAGTCGAAGGGTGACTTCCATGGCGCTGAAGAATA TTACCACAGGGCAATTTTGGTGGAGCCTGAAGATGGTGAGATTTTGATGCAGTATGGCAAACTGGTGTGGGAAGTCCACCATGACAGAGATAGAGCAAAG CATTTCTTTGAGCGTGCAGCTGAAGCAGCACCTCAAGACAGCAACGTACTTGCGGCATATGCTAGTTTTCTCTGGGAAATAAGTGATGAAGATGAAGATG ATAATAAATTCCAGATGGAACAATTGAAGGTTACAAACCCCATTATCAGTGGCAAAGAGGAACACATCATCACTGGAAAAAACAATGAGGTGAATGTGGA GGAGTATTACAAGAGAATGGTGGATGAGAACCCGAACAATGCTCTAGTTCTCAGAAACTACGCTCAGTTTCTATCTCAGTCTAAAGGAGACCTGCAAGGA GCGGAGGAGTACTACTCGCGAGCGATACTGGCTGATCCTAGTGATGGAGAAATCATATCTCAGTATGCAAGACTTGTGTGGGAAGTCCACCACGACCAGA AGAAGGCGTCATCTTACTTTGAAAGGTCAACTCAAGCCTCCCCTGCAGATAGCCATGTTCTGGCAGCATATGCTAGTTTCCTGTGGGAGACTGAGGAAGA CGAGGACGAAGAAACCGAGCTATCAAGTCAGCTTCTTGGTCGTGGAGGGGCAATGGTCGCAGCAGCTAACTGA
AA sequence Show only first row Show all	>Lus10014468 pacid=23176832 polypeptide=Lus10014468 locus=Lus10014468.g ID=Lus10014468.BGIv1.0 annot-version=v1.0 MLLRTSSSSGIKGSVFSVVSESPLDIPTSNFRHSPSHLSFPPPQLNQDSTGGERRRRRGGFRRAWSESNIDRFTAPSCDYSKQLQSLTPRRYPTRKRMLH SAPSFSIFTADEEEEGEQKDEGLVRTVTIGENIEEGGDFSFGKSMGLIVEEGEETEQQPEGDEKDDGVGKLGLIFTGVVTTNLGGVGDEDEPASPPMYLA AGLGFDSIDFQSATGGDAASLLDFDETGDLEEYYRKMLDQFPSHTLFLRNYAHLLQSKGDFHGAEEYYHRAILVEPEDGEILMQYGKLVWEVHHDRDRAK HFFERAAEAAPQDSNVLAAYASFLWEISDEDEDDNKFQMEQLKVTNPIISGKEEHIITGKNNEVNVEEYYKRMVDENPNNALVLRNYAQFLSQSKGDLQG AEEYYSRAILADPSDGEIISQYARLVWEVHHDQKKASSYFERSTQASPADSHVLAAYASFLWETEEDEDEETELSSQLLGRGGAMVAAAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10014468 [exp]	0	1
AT1G12390			Cornichon family protein (.1)		Lus10006997 [exp]	1.0	0.8786
					Lus10007667 [exp]	6.0	0.8550
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	8.9	0.8477
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	11.2	0.8428
AT5G09225			unknown protein		Lus10020870 [exp]	11.7	0.8177
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	12.7	0.8444
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10038703 [exp]	16.4	0.8426
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	17.7	0.8461
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	20.4	0.8319
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	21.4	0.8504

Compare expression of checked genes

Lus10014468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.