Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G60980 144 / 2e-38 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 106 / 6e-25 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT3G25150 94 / 7e-21 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G07250 90 / 6e-19 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G13730 83 / 4e-17 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT2G03640 82 / 7e-17 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT1G69250 59 / 2e-09 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G55540 44 / 0.0002 nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023722 [exp] 533 / 0 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022873 [exp] 184 / 2e-53 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 134 / 1e-34 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10036918 [exp] 123 / 1e-30 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10025906 [exp] 123 / 3e-30 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10037066 [exp] 118 / 6e-29 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10024953 [exp] 107 / 4e-27 AT5G43960 159 / 8e-47 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022765 [exp] 103 / 6e-24 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10026668 [exp] 93 / 3e-20 AT2G03640 255 / 5e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065500 [exp] 250 / 2e-78 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G257000 [exp] 186 / 6e-54 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 171 / 2e-48 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.015G058700 [exp] 110 / 3e-26 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G246600 [exp] 104 / 4e-24 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.017G094600 [exp] 99 / 1e-22 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.008G096700 [exp] 99 / 2e-22 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.010G157800 [exp] 95 / 5e-21 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.003G170800 [exp] 42 / 9e-05 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [flax] [poplar] NTF2 PF02136 [flax] [poplar] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Lus10014469 pacid=23176855 polypeptide=Lus10014469 locus=Lus10014469.g ID=Lus10014469.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTTATGCTATGCCGGTTACTGCTGCTCAGGTGGACAACCAATCTTTCCTTCGTGGTTCTGCGGGTACCGCTGTAGGGACGTATTTTGTGA GACAATACTATGAAGTGCTGCAGTCTCAACCGGCCCTTGTCCACCAGTTCTATAGTGATTTCAGCACCATGCTTCGCATTGATGGCTCTACTCGAGAATC CTACACCACGATACTTGATATCCATTCACTCATCATGTGCCTCAACTACACCGCGATTGAAATCAAGACGGCACATGCCTTGGAATCATGGAACTGTGGG GTTCTTGTGATGGTGTCTGGTCATTTGCGGTCGATGAACTTTGGTGGAACCAAGAAGTTTGTTGAGACTTTTTTCTTAGCACCCCAAGACAAAGGGTATT TTGTTCTCAACGACGTGTTCCACTTCATTGAAGAGGAACAACTTCACCACCATCCGGGTGTATTGTTAGCACAAAGGAATCATGATTCCAATCTTAATGC TCATTCTACCACTATTTCTGAACCAGTGTCAAATTATTTGTTCGATGGAGAAAGTCAGTCGAAGGAGTTCCTAGCTCCTACTGATACTGTGGAACTTTTA CGGGTTGCTAAGGAGCAACCTGCACCTCCAGCAACATCAGAACGGAACCACAACTCTCCAGCTACTTCTCAAACGACGATTGTGACATCAAATTCCGTTG ATAACTACACTACTGACAATGTAGATGAGCCTTTAGGTGCAGAAGATGAAGATGAAATAAGATCCGTATACGTTAGGAACTTGGCACCTACTGCCTCTGA AGAAGAGATTGAGGAGGAATTCACCAAGTTTGGGAAAGTAGCACCTGAAGGTGTTGTCATTAGGAGTCGCCAGGACGTTGGTGTATGTTATGCATTTGTT GAATTCGAAGACATGAATGGTGTTCTCAATGCTGTGAAAGCGGGCAGTGCACAGGTTGCCGGCAGGCCAGTATACATTGAGGAACGGAGACCAAACAGTT ACATTCCATCTCGATTTGGAAGGGGGAGAGGCAGGGGAAGGGGCAGCTACTACCAAGCAGACGCTACTCGTGGTCGTTTTGGTTCACGAAGTTTCGGTAG GGGCGGCAGCTACGACGGGGAGTACAACAGAGGCAGAGGAAATGGATATTACAGGCCAATTAATCGCCAAGACATGGCATCAATGGAGAGTGGACAAAAT GAGTCCGACTATACATCTTAG
AA sequence Show only first row Show all	>Lus10014469 pacid=23176855 polypeptide=Lus10014469 locus=Lus10014469.g ID=Lus10014469.BGIv1.0 annot-version=v1.0 MASPYAMPVTAAQVDNQSFLRGSAGTAVGTYFVRQYYEVLQSQPALVHQFYSDFSTMLRIDGSTRESYTTILDIHSLIMCLNYTAIEIKTAHALESWNCG VLVMVSGHLRSMNFGGTKKFVETFFLAPQDKGYFVLNDVFHFIEEEQLHHHPGVLLAQRNHDSNLNAHSTTISEPVSNYLFDGESQSKEFLAPTDTVELL RVAKEQPAPPATSERNHNSPATSQTTIVTSNSVDNYTTDNVDEPLGAEDEDEIRSVYVRNLAPTASEEEIEEEFTKFGKVAPEGVVIRSRQDVGVCYAFV EFEDMNGVLNAVKAGSAQVAGRPVYIEERRPNSYIPSRFGRGRGRGRGSYYQADATRGRFGSRSFGRGGSYDGEYNRGRGNGYYRPINRQDMASMESGQN ESDYTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43960			Nuclear transport factor 2 (NT...		Lus10014469 [exp]	0	1
AT4G24810			Protein kinase superfamily pro...		Lus10043122 [exp]	2.8	0.9160
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	4.7	0.9192
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	7.2	0.9086
AT2G44640			unknown protein		Lus10043347 [exp]	8.7	0.8987
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	8.9	0.8819
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	9.9	0.9093
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	11.2	0.8867
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	12.4	0.8621
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	14.4	0.8591
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	15.8	0.8610

Compare expression of checked genes

Lus10014469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.