Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60000 127 / 6e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 75 / 1e-15 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT2G37220 69 / 8e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 62 / 2e-11 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 61 / 1e-10 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G53460 56 / 4e-09 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT2G35410 52 / 5e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G61030 49 / 9e-07 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G01080 45 / 1e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G23830 44 / 1e-05 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023723 [exp] 193 / 2e-60 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002222 [exp] 87 / 3e-20 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 87 / 4e-20 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 74 / 1e-15 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 72 / 1e-14 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10041602 [exp] 70 / 4e-14 AT3G52150 263 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10010262 [exp] 69 / 1e-13 AT3G52150 262 / 5e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10016174 [exp] 67 / 5e-13 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10029372 [exp] 67 / 5e-13 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172100 [exp] 143 / 6e-42 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 138 / 4e-40 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G068300 [exp] 81 / 7e-18 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.006G202000 [exp] 79 / 2e-17 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G090700 [exp] 76 / 2e-16 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 72 / 5e-15 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G065900 [exp] 66 / 1e-12 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G086500 [exp] 62 / 2e-11 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.012G090200 [exp] 61 / 4e-11 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 57 / 9e-10 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014470 pacid=23176846 polypeptide=Lus10014470 locus=Lus10014470.g ID=Lus10014470.BGIv1.0 annot-version=v1.0 ATGGCAACACTTGGTGCAGCTGCCATTAGTTCATCTTTCTCCCCATCCATCAACAATAGCCTCAAATGCACCCAAAATAATAGCCTAGACCATATCCCGA TTGCTACTGCCACATGGCGCCCTGCAAAGGTGTACGCCCCCGCTGTTACTCAGGACCAGACAGAGACGGAGAAGGTTGGAGTTGCGGAGACGGAGACGGA GACCGTGGAAGCAGCAGAGACGGAGACGGAGACGACGGTGGAAGTAGCAGAGACAGAGACGGAAATGGTTGAAGTAGAAGAGACGGCTGCAACTACTACT CTAGCTGAGGGAGAGCAAAAGGTTGAAGAAGCCATCAGTGGTGTTAGTACGAAGCTGTACAATGGGAATTTGCCCTTTAATGTGGATAGTGCGGAGCTTG CTGGGGTCATTCGGGACCATGTCAGCCTGAACTTATTGAGGGTAACTGGGAAAAGCAGAGGATTTTCCTTCGTCACAATGAGCAGCATTGAGGATTGCGA TTCGGTGATTCAAAATTTGGACGGCAAAGGTCAAATACTGAGGGTGAACATGGCAGACATGCCCCTAGCAAGAGACCGTATGTACCCGGATACAGAACAC AAGCTCTTTGTTGGGAACGTATCATGGCCAGTCACATCCGAGAGCTTAACATAA
AA sequence Show only first row Show all	>Lus10014470 pacid=23176846 polypeptide=Lus10014470 locus=Lus10014470.g ID=Lus10014470.BGIv1.0 annot-version=v1.0 MATLGAAAISSSFSPSINNSLKCTQNNSLDHIPIATATWRPAKVYAPAVTQDQTETEKVGVAETETETVEAAETETETTVEVAETETEMVEVEETAATTT LAEGEQKVEEAISGVSTKLYNGNLPFNVDSAELAGVIRDHVSLNLLRVTGKSRGFSFVTMSSIEDCDSVIQNLDGKGQILRVNMADMPLARDRMYPDTEH KLFVGNVSWPVTSESLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10014470 [exp]	0	1
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	6.3	1.0000
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	6.6	1.0000
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10022417 [exp]	11.2	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	12.5	1.0000
					Lus10022529 [exp]	13.0	1.0000
					Lus10003843 [exp]	13.2	1.0000
					Lus10001326 [exp]	13.9	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	15.1	1.0000
					Lus10022172 [exp]	15.7	1.0000
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	19.0	1.0000

Compare expression of checked genes

Lus10014470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.