Plant FIBer expression Database

Lus10014471 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023724
[exp]
298 / 1e-103 AT4G21865 55 / 2e-09 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G172000
[exp]
107 / 2e-29 AT4G21865 59 / 2e-11 unknown protein
Potri.010G065666
[exp]
95 / 5e-24 AT4G21865 50 / 8e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10014471 pacid=23176839 polypeptide=Lus10014471 locus=Lus10014471.g ID=Lus10014471.BGIv1.0 annot-version=v1.0
ATGCTCGTGTATCCGAAGGTGAAGGTTAGGAGGGAACATGAAGGTGAAGATGATCGACACTGGGGTTCCTTGCTTTCTTTGAAGGATATCCAGTTCCTCA
CCATTCAGGAAACCCGTTTCCCAGTTAAACAGCTACAAGAGCTTGCAGTTAAACGCCGGCAAGATGCTTCACCATCTCCCAGTCCCAAGGCCAAAATTCC
CAAGTATTACGTGCCCAGCTTGATCCTGCCACAGCTGCCTGTAACACCAACAACTCCAGTCTCAGTTTCTACAGAAAGTTCAGGAACAGACACCAAAAGC
AATCCTGATGAAGGAGATGATAGACCACTTATTCGAGCCGGTTCAATTCCGCCACCGAGAGCTGTATTATCTAGTCCTCAAAATGATGCAATGATTAGGA
ACAAGAACCGGGTGTCCAAACCAGCCTTACGGCCTTCTGCTCTGAGGAATAAGAATTCGATTCAAGAGAGAAATATCCAACACTGTAAAGTCACTCCGAA
AACAGCCGTTGATGACACTGTAGTACGGAGTAGAAAGTCGAAAGATCAGCTTCCTGCTGACAAGAGTGATCAGAAAGGGAAGAAAGGGTCATCATCAGCA
GCCATTTCTAGTCGTAGAAGACATGTAGTGGAGTGGATAAACTGA
AA sequence
>Lus10014471 pacid=23176839 polypeptide=Lus10014471 locus=Lus10014471.g ID=Lus10014471.BGIv1.0 annot-version=v1.0
MLVYPKVKVRREHEGEDDRHWGSLLSLKDIQFLTIQETRFPVKQLQELAVKRRQDASPSPSPKAKIPKYYVPSLILPQLPVTPTTPVSVSTESSGTDTKS
NPDEGDDRPLIRAGSIPPPRAVLSSPQNDAMIRNKNRVSKPALRPSALRNKNSIQERNIQHCKVTPKTAVDDTVVRSRKSKDQLPADKSDQKGKKGSSSA
AISSRRRHVVEWIN

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21865 unknown protein Lus10014471
[exp]
0 1
AT4G00750 S-adenosyl-L-methionine-depend... Lus10041366
[exp]
2.2 0.9058
AT4G36160 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2,... Lus10015312
[exp]
4.2 0.8901
AT3G53490 unknown protein Lus10003989
[exp]
5.5 0.9040
AT1G27300 unknown protein Lus10015771
[exp]
8.8 0.8598
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10022189
[exp]
8.9 0.8903
AT2G37480 unknown protein Lus10003982
[exp]
9.5 0.8957
AT4G21865 unknown protein Lus10023724
[exp]
9.5 0.8651
AT3G47160 RING/U-box superfamily protein... Lus10006447
[exp]
9.8 0.8774
AT2G20740 Tetraspanin family protein (.1... Lus10018584
[exp]
10.6 0.8894
AT1G21780 BTB/POZ domain-containing prot... Lus10042717
[exp]
10.6 0.8926

Lus10014471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.