Plant FIBer expression Database

Lus10014472 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13330 417 / 7e-144 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023725
[exp]
832 / 0 AT4G13330 445 / 5e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G171900
[exp]
525 / 0 AT4G13330 421 / 3e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10014472 pacid=23176834 polypeptide=Lus10014472 locus=Lus10014472.g ID=Lus10014472.BGIv1.0 annot-version=v1.0
ATGTTGTGGCGCAGAGCTGGCCTAAGCTTTGGACCGAATATTGTTCACAACCGGCGACGGTTCTGCACTGCAACCCGTCGTCAGATTGAGGACGAGGGTG
ATTGGTTCTATTCCTCAGAATGGTGGGGGACGGACTCCGATGGCCACACCGTTCTGCGCGCCGATTCCAGTCATGGGAATGGCGTCGTTTCAGTGCTAGC
TTACCCCTCTTCTAGACCTGTTCAGGCTGAATGGCCAAAAATTGAGAAATGGCTGCAGGAAAGATACGCATTTGTCCATCCAAGTCATACTCAACACAAG
GGTCGTTTCAAGATACTTGGATATCAATGGCGGACGCTTCATTTTAATGATACTACACGCCAGAGCACTGCTAAAGTAATGACTGCTTACCACCAGTCAC
AGCCTGGCTCTCTGTTCTTGTTCCAGCAGCCACATTGTTTAGCAGTTCCATATTTAAAGAGTATGGCAGCCGCAGGTTTAACTGCTATTGCGAGCTGTGG
TTTCGACCTTGCTGGTGTTGCCTATGGAAAGAAGAAAATGCGTGTTCTATGCATAGGTCATGGCGGAGGGAGCTTGCCCTTGTTCTTAGCAAGCAAACTG
CAAGGTGCCATAATCGATATAGTCGAGATCGATCCTGTCGTTATATCCACATCTATCCAAGCAATGGGGTTCCCAGCTTTCTCTCTAATGAACCCATCTG
GACAACGTGCGATGCCAAACCCCACTGGCATGGATCTTGTTATGTGGAAAGGCATCCACGAAAGGGTCCACCTTTACGAAGCAGATGCAGAGAAGTTCAT
CCTGAACACCAGCAAAACCACTTACGACTTGGTCTTTATTGATGCTTATGATGGCGACGACATCTTTCCTCGCAAGCTATGGGATCCAGACTTGCCGTTT
CTGAAAGCTCTCAGTCAACACCTGCACTGGGACCATGGCACTGTGGTGGTGAACCTTCACTCTTCTGACCCTTGCGATTCAAATTTGTCTTCCAACTCGT
ATTTCGTAGACCAACTTCTGCCGATGACCAGGCATGTGTCAAGTGCTTGCAGAGCATACAGAGACGTCATAGTAGGGAATGGTGAAGGTGCAGCTTTAAC
TGTCACAGTTCCGTGGGTTTGTAATATGAGTCTTGTTGTTTCCAGAGGTCTCAAGACTGATGCTAATAGCTGCAGCAGTAAAGATGGAGTCTTAGAAACT
CTGCTGTCAAGATCGTTTGAAGTTGAGAAGGCTGTAAACCTTCCCTTTTCATGTGTGGAGTATATAAAGAGAGACTTTGAGCTCATTAGTTGA
AA sequence
>Lus10014472 pacid=23176834 polypeptide=Lus10014472 locus=Lus10014472.g ID=Lus10014472.BGIv1.0 annot-version=v1.0
MLWRRAGLSFGPNIVHNRRRFCTATRRQIEDEGDWFYSSEWWGTDSDGHTVLRADSSHGNGVVSVLAYPSSRPVQAEWPKIEKWLQERYAFVHPSHTQHK
GRFKILGYQWRTLHFNDTTRQSTAKVMTAYHQSQPGSLFLFQQPHCLAVPYLKSMAAAGLTAIASCGFDLAGVAYGKKKMRVLCIGHGGGSLPLFLASKL
QGAIIDIVEIDPVVISTSIQAMGFPAFSLMNPSGQRAMPNPTGMDLVMWKGIHERVHLYEADAEKFILNTSKTTYDLVFIDAYDGDDIFPRKLWDPDLPF
LKALSQHLHWDHGTVVVNLHSSDPCDSNLSSNSYFVDQLLPMTRHVSSACRAYRDVIVGNGEGAALTVTVPWVCNMSLVVSRGLKTDANSCSSKDGVLET
LLSRSFEVEKAVNLPFSCVEYIKRDFELIS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G13330 S-adenosyl-L-methionine-depend... Lus10014472
[exp]
0 1
AT5G46570 BSK2 BR-signaling kinase 2 (.1) Lus10035136
[exp]
9.4 0.8791
AT1G70780 unknown protein Lus10019143
[exp]
10.6 0.8903
AT3G10410 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CAR... Lus10037958
[exp]
16.7 0.8723
AT1G19580 GAMMACA1 ,GAMMA... gamma carbonic anhydrase 1 (.1... Lus10041768
[exp]
22.8 0.8753
AT3G08590 iPGAM2 2,3-biphosphoglycerate-indepen... Lus10042283
[exp]
43.3 0.8639
AT1G36280 L-Aspartase-like family protei... Lus10028260
[exp]
54.9 0.8639
AT2G13290 beta-1,4-N-acetylglucosaminylt... Lus10043257
[exp]
60.4 0.8447
AT5G20590 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 ... Lus10011932
[exp]
64.1 0.8595
AT5G60520 Late embryogenesis abundant (L... Lus10015148
[exp]
65.5 0.8503
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Lus10039636
[exp]
70.8 0.8592

Lus10014472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.