Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05590 298 / 2e-100 TLD-domain containing nucleolar protein (.1.2) AT4G39870 200 / 5e-61 TLD-domain containing nucleolar protein (.1.2) AT5G06260 61 / 3e-10 TLD-domain containing nucleolar protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023727 [exp] 579 / 0 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10041697 [exp] 193 / 1e-58 AT4G39870 419 / 4e-146 TLD-domain containing nucleolar protein (.1.2) Lus10024053 [exp] 191 / 2e-54 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10021306 [exp] 70 / 5e-13 AT5G06260 574 / 0.0 TLD-domain containing nucleolar protein (.1) Lus10016984 [exp] 49 / 3e-06 AT5G06260 460 / 5e-161 TLD-domain containing nucleolar protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065900 [exp] 401 / 1e-140 AT2G05590 286 / 6e-96 TLD-domain containing nucleolar protein (.1.2) Potri.005G075800 [exp] 208 / 2e-64 AT4G39870 405 / 1e-140 TLD-domain containing nucleolar protein (.1.2) Potri.007G092700 [exp] 207 / 8e-64 AT4G39870 414 / 3e-144 TLD-domain containing nucleolar protein (.1.2) Potri.006G206200 [exp] 71 / 2e-13 AT5G06260 604 / 0.0 TLD-domain containing nucleolar protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07534 [flax] [poplar] TLD TLD
Representative CDS sequence Show only first row Show all	>Lus10014476 pacid=23176848 polypeptide=Lus10014476 locus=Lus10014476.g ID=Lus10014476.BGIv1.0 annot-version=v1.0 ATGATCGCATTGAAGGACAAGGTTTCTAATCAGCTGTCTCGTTTATTTGCCGATTCACCCAAATCGCCTTCTTCTGATTCACTCCCCTCGCGTCCTTCTC ATAATTCTCAGGGCAGGACAGGTACTCAAGGCGAGAGGTCATATTCGTCATATTTCTCATTCGTGGCTCCTACATTGGGCTTTGGTAAGTCTGACTCACA AAATGGCAAGGACCAGAGAATTGAGTTAGCACCAGCTCCATCCCTTCCACTAAGATGGAGAGGTAGAGAGTTTGACCAGGAAGAGGAATTGAGATACCAT GAATGCGAGAATCAGGTACGCCAGAGAGCTGGTGAAGGTGCAAAAGTATCTAGAGAAGCTTTTGATAAGAATCAAACAGGCATATCTCCTGATGACAATG TCGATTGTTATTCTCAAACCAGCAGCAGCGACAGTGATATTTTTGAAGAAGCATCAGAGAAACAGACAACCAGAATACCGTTTCTCAAAGACGAGTCGAC TTTCATATCATCTGTCTTGTTTGAGTTCCTGATGTCATCCCTCCCTAACAGGGTCAAGGGGAATGAATGGGTTTTGCTATATAGTACATTGAAGCATGGC ATATCTCTCCGTACGCTTATTCGCAAGAGCGCTGACCTTTCTGGCCCGTGTTTACTGATTGCTGGAGACAGACAAGGTGCTATTTTCGGGGGACTTCTAG ATTGTCCATTGAGAGCCACTTCCAAGAGGAAATATCAAGGGACAAACCAGTCGTTTGTATTTACGACAATATATGGTGCTCCAAGACTATTTCGGCCAAC AGGTGCCAACCGATATTACTACTTGTGTTTGGAGGACTTATTAGCACTTGGTGGTGGTGAAAACTTTGCTTTACGCTTGGATGAGGACCTGTTGCATGGA ACTAGTGGTCCCTGCGAAACATTTGGGAATTTATGTCTAGCGCACAACTCAGAGTTCGAGTTACGACATGTGGAGCTTTGGGGCTTTACGTATTCATCAA AATACTGA
AA sequence Show only first row Show all	>Lus10014476 pacid=23176848 polypeptide=Lus10014476 locus=Lus10014476.g ID=Lus10014476.BGIv1.0 annot-version=v1.0 MIALKDKVSNQLSRLFADSPKSPSSDSLPSRPSHNSQGRTGTQGERSYSSYFSFVAPTLGFGKSDSQNGKDQRIELAPAPSLPLRWRGREFDQEEELRYH ECENQVRQRAGEGAKVSREAFDKNQTGISPDDNVDCYSQTSSSDSDIFEEASEKQTTRIPFLKDESTFISSVLFEFLMSSLPNRVKGNEWVLLYSTLKHG ISLRTLIRKSADLSGPCLLIAGDRQGAIFGGLLDCPLRATSKRKYQGTNQSFVFTTIYGAPRLFRPTGANRYYYLCLEDLLALGGGENFALRLDEDLLHG TSGPCETFGNLCLAHNSEFELRHVELWGFTYSSKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	0	1
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	1.0	0.8355
AT2G38580			Mitochondrial ATP synthase D c...		Lus10025211 [exp]	2.4	0.8225
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10011011 [exp]	3.2	0.8197
AT2G02910			Protein of unknown function (D...		Lus10037186 [exp]	4.0	0.8104
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	4.2	0.8268
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	4.9	0.8215
AT3G03810		EDA30	embryo sac development arrest ...		Lus10010654 [exp]	5.9	0.8131
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10036525 [exp]	6.3	0.8083
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	6.9	0.8193
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10020341 [exp]	9.3	0.7559

Compare expression of checked genes

Lus10014476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.