Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33340 776 / 0 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G04510 768 / 0 MAC3A MOS4-associated complex 3A (.1.2) AT2G41500 96 / 6e-21 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G49660 89 / 3e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 86 / 2e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 81 / 2e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 82 / 5e-16 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G18080 78 / 1e-15 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 79 / 3e-15 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT2G32700 77 / 2e-14 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023728 [exp] 1031 / 0 AT2G33340 786 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10021059 [exp] 120 / 9e-29 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 119 / 1e-28 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024447 [exp] 87 / 1e-17 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10039636 [exp] 84 / 2e-17 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 80 / 4e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 82 / 7e-16 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 79 / 8e-16 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 81 / 9e-16 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G171600 [exp] 863 / 0 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G066000 [exp] 854 / 0 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.006G045800 [exp] 120 / 7e-29 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G148500 [exp] 88 / 8e-19 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 84 / 6e-17 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 82 / 7e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 84 / 1e-16 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.008G002300 [exp] 83 / 1e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 81 / 7e-16 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 78 / 2e-15 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08606 [flax] [poplar] Prp19 Prp19/Pso4-like
Representative CDS sequence Show only first row Show all	>Lus10014477 pacid=23176831 polypeptide=Lus10014477 locus=Lus10014477.g ID=Lus10014477.BGIv1.0 annot-version=v1.0 ATGCAGTGCGCAATCTCCGGCGACGTGCCAGTAGAGCCCGTCGTTAACTCCAAGTCTGGCCTTATCTACGAGAAACGCCTAATCGAGAGGTTCATAAATG ATTCTGGAAAATGCCCCGTTACTGGTGAGCCTCTTACTGCTGATGACATAATTCCAATTAAAATGGGCAAGATTGTGAAGCCAAGAACTGTTCAGACAGC TAGTATCCCTGGGATGCTTGGCATGTTCCAGAATGAATGGGATGGTCTCATGTTATCCAATTTTGCTTTGGAACAACAACTACATACTGCAAGGCAGGAG CTCAGTCATGCACTTTACCAGCATGATGCTGCTTGCCGCGTAATTGCAAGACTGAAAAAGGAAAGAGACGAATCGAGAGCATTGCTTGCACAGGCAGAGA GCAAGATACCTATGTCAACTGCAGTAACTGTTGCAGCTAATGCTAATGGGAATAGAGAAGCTGAGGTTAATGATTTGGCTCTTGCCGCGATGGAGATGCG TCCAGGGATTTCACTCGATTTAGTTGCCGAGTTAACAGAGTGCAATGCTGCTCTTTCACAGCAACGCAAAAAGAGACAGATTCCTTCAACCTTGGCATCT ATTGAAGAGCTGGGGAGGTACACCCAACTGTCAAGTCATCCACTTCAAAAGACAAACAAACCAGGAATTTCATCCATTGACATCCTGTATTCCAAGGACA TTATTGCCACTGGAGGGGTTGATTCTACAGCTGTACTTTTTGATCGTGCATCAGGACAAATCCGATCAACACTCAGTGGTCACTCAAAGAAGGTTACCAG TGTAAAATTTGTGGCTGATGGTGGCCTGTTCTTGTCAGGATCAGCTGATAAGACTGTTCGTGTTTGGCAAGAATCTGAAGAAGGCAGCTACTATTGCAAA CAGATTTTGCGGGATCATAAAGCTGAGGTTCAAGCTGTCACTGTGCATGCTACGAATAATTACTTTGTGACTGCTTCCCTCGATAATACATGGTGCTTCT ATGATCTTTCCTCAGGTTTATGCCTAGCACAGGTTGATGCTGTTGGAGACACATCCAGTTCTGAAGGGTACACGGCTGCTGCCTTCCATCCTGATGGTCT CATCCTTGGTACTGGCACCTCTGAAGCTTCGGTCAATATCTGGGATGTCAAAGTCCAGAAAAATGTTGCCAAATTCGAAGGACATGTTGGGCCTGTAACT GCCATATCTTTCTCGGAAAATGGTTACTTCCTTGCTACTGCTGCCAGTGATGGCGTGAAGCTTTGGGATTTGCGTAAATTGAGGAACTTTAAGACTCTTA ATCTTTATGATGCGGATACCCCAACCAACTCTGTTGCGTTCGACCATAGTGGTTCTTACTTGGGAGTTGCAGGCTCAGACATAAGAGTGTTCCAAGTGGC TAGTGTGAAAGCAGACTGGAACTGCATCAAAACACTTCCCGATTTATCCGGAACAGGGAAAGCAACTTGTGTGAGATTTGGAATGGATGCAAAATATTTA GCTGTGGGATCAATGGATCGTAATCTGAGAATATTTGGGCTGCCTGCTGAGGATGATACATCAATGGAAGATTCATAG
AA sequence Show only first row Show all	>Lus10014477 pacid=23176831 polypeptide=Lus10014477 locus=Lus10014477.g ID=Lus10014477.BGIv1.0 annot-version=v1.0 MQCAISGDVPVEPVVNSKSGLIYEKRLIERFINDSGKCPVTGEPLTADDIIPIKMGKIVKPRTVQTASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQE LSHALYQHDAACRVIARLKKERDESRALLAQAESKIPMSTAVTVAANANGNREAEVNDLALAAMEMRPGISLDLVAELTECNAALSQQRKKRQIPSTLAS IEELGRYTQLSSHPLQKTNKPGISSIDILYSKDIIATGGVDSTAVLFDRASGQIRSTLSGHSKKVTSVKFVADGGLFLSGSADKTVRVWQESEEGSYYCK QILRDHKAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCLAQVDAVGDTSSSEGYTAAAFHPDGLILGTGTSEASVNIWDVKVQKNVAKFEGHVGPVT AISFSENGYFLATAASDGVKLWDLRKLRNFKTLNLYDADTPTNSVAFDHSGSYLGVAGSDIRVFQVASVKADWNCIKTLPDLSGTGKATCVRFGMDAKYL AVGSMDRNLRIFGLPAEDDTSMEDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10014477 [exp]	0	1
AT1G20060			ATP binding microtubule motor ...		Lus10034537 [exp]	8.4	0.8359
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10016723 [exp]	16.6	0.7857
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	17.2	0.8107
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	20.4	0.8279
AT1G42440			unknown protein		Lus10013232 [exp]	29.2	0.7961
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	32.6	0.7654
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	32.9	0.7938
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	33.2	0.7634
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	35.3	0.7943
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	37.1	0.7800

Compare expression of checked genes

Lus10014477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.