Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04500 201 / 3e-63 CCT motif family protein (.1) AT2G33350 196 / 6e-61 CCT motif family protein (.1.2) AT1G63820 93 / 1e-22 CCT motif family protein (.1) AT5G41380 89 / 4e-21 CCT motif family protein (.1) AT3G12890 86 / 5e-20 ASML2 activator of spomin::LUC2 (.1) AT4G27900 67 / 2e-13 CCT motif family protein (.1.2) AT5G53420 66 / 2e-13 CCT motif family protein (.1.2.3) AT5G59990 63 / 6e-12 CCT motif family protein (.1.2) AT5G24930 55 / 6e-09 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G57660 53 / 4e-08 CO COL5, ATCOL5 CONSTANS-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023727 [exp] 368 / 1e-123 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10024655 [exp] 84 / 4e-19 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10032288 [exp] 84 / 8e-19 AT1G63820 160 / 5e-47 CCT motif family protein (.1) Lus10031192 [exp] 79 / 4e-17 AT3G12890 107 / 2e-27 activator of spomin::LUC2 (.1) Lus10028137 [exp] 78 / 4e-17 AT5G59990 101 / 2e-25 CCT motif family protein (.1.2) Lus10031770 [exp] 78 / 7e-17 AT3G12890 104 / 2e-26 activator of spomin::LUC2 (.1) Lus10019027 [exp] 72 / 7e-15 AT5G53420 250 / 8e-83 CCT motif family protein (.1.2.3) Lus10005008 [exp] 72 / 9e-15 AT5G53420 254 / 2e-84 CCT motif family protein (.1.2.3) Lus10014919 [exp] 68 / 2e-13 AT5G53420 205 / 3e-65 CCT motif family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G171500 [exp] 225 / 3e-72 AT1G04500 305 / 8e-101 CCT motif family protein (.1) Potri.010G066100 [exp] 224 / 1e-71 AT1G04500 263 / 3e-84 CCT motif family protein (.1) Potri.001G101200 [exp] 100 / 4e-25 AT5G41380 187 / 4e-57 CCT motif family protein (.1) Potri.003G130500 [exp] 96 / 2e-23 AT5G41380 210 / 8e-66 CCT motif family protein (.1) Potri.005G097700 [exp] 84 / 3e-19 AT3G12890 156 / 2e-46 activator of spomin::LUC2 (.1) Potri.007G066800 [exp] 81 / 3e-18 AT3G12890 120 / 2e-32 activator of spomin::LUC2 (.1) Potri.001G233600 [exp] 77 / 3e-17 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2) Potri.012G014000 [exp] 72 / 4e-15 AT5G53420 257 / 1e-85 CCT motif family protein (.1.2.3) Potri.015G014000 [exp] 71 / 2e-14 AT5G53420 275 / 1e-92 CCT motif family protein (.1.2.3) Potri.001G136700 [exp] 67 / 5e-13 AT3G12890 85 / 3e-19 activator of spomin::LUC2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10014478 pacid=23176836 polypeptide=Lus10014478 locus=Lus10014478.g ID=Lus10014478.BGIv1.0 annot-version=v1.0 ATGACCACTTTCATGCCTATGAATGCTGTACTGTCGTCAGCAGATTGCTCCGCAGTTTTCGGTGGAGGGTTCTATACTACTACTACTACTACTACTACTA CTGCTGCTGCTGATCAGTTCCAGCCTCAGGATCAGACGGATTACCAAGGTGACAATGGTGGAATTTTCTGCCCAGCTGACTCTCTACAGCGTGCTTTTAA CCCATCAGACCTTGAGGTGTTCAACAATGAGACAAAGCAAATAGTGGGTGGAGGAACAACGAGCTCTCCACCGTTGACAACAGAGTTGACCAATCTGGAA GATTCGAGTTTCAAAGTAGGGAAGCTATCAGTTGAGCAGAGGAAGGAGAAGATTCATAGGTACATGAAGAAGAGGAATGAAAGGAACTTCAGCAAGAAAA TCAAGGTCGTCAAACAGTATGCTTGCCGGAAGACACTTGCAGACAGCAGGCCTAGAGTGAGAGGAAGGTTTGCAAAGAACGATGATTTCGGAGAGAGCAA TAGAGCTGCTAGCAGTAACCACGAGGAGGAAGACGATGGTGATCAGGTAGCAGTGAAAGAAGAAGAACAGATGGTGAATTCTGCTGATATATTTGCACAC ATCAGTGGGGTGAACTCCTTCAAATGCAACTACTCCATTCAATCATGGATCTAA
AA sequence Show only first row Show all	>Lus10014478 pacid=23176836 polypeptide=Lus10014478 locus=Lus10014478.g ID=Lus10014478.BGIv1.0 annot-version=v1.0 MTTFMPMNAVLSSADCSAVFGGGFYTTTTTTTTTAAADQFQPQDQTDYQGDNGGIFCPADSLQRAFNPSDLEVFNNETKQIVGGGTTSSPPLTTELTNLE DSSFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKVVKQYACRKTLADSRPRVRGRFAKNDDFGESNRAASSNHEEEDDGDQVAVKEEEQMVNSADIFAH ISGVNSFKCNYSIQSWI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04500			CCT motif family protein (.1)		Lus10014478 [exp]	0	1
					Lus10003082 [exp]	6.8	1.0000
AT5G22450			unknown protein		Lus10000530 [exp]	7.5	1.0000
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10004066 [exp]	11.0	1.0000
					Lus10003536 [exp]	12.2	1.0000
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	12.5	1.0000
AT4G27790			Calcium-binding EF hand family...		Lus10005911 [exp]	13.0	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	15.0	1.0000
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10011951 [exp]	16.6	1.0000
					Lus10011642 [exp]	17.6	1.0000
AT3G49720			unknown protein		Lus10012481 [exp]	18.4	1.0000

Compare expression of checked genes

Lus10014478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.