Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33360 245 / 8e-75 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT1G04490 177 / 5e-50 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT4G11450 81 / 9e-16 Protein of unknown function (DUF3527) (.1) AT1G63520 64 / 2e-10 Protein of unknown function (DUF3527) (.1) AT2G29510 54 / 2e-07 Protein of unknown function (DUF3527) (.1) AT2G37930 45 / 0.0001 Protein of unknown function (DUF3527) (.1) AT5G59020 44 / 0.0003 Protein of unknown function (DUF3527) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023729 [exp] 966 / 0 AT2G33360 355 / 9e-115 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10002006 [exp] 62 / 6e-10 AT4G11450 477 / 3e-159 Protein of unknown function (DUF3527) (.1) Lus10035493 [exp] 62 / 9e-10 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1) Lus10017200 [exp] 57 / 3e-08 AT5G01030 229 / 4e-64 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10021110 [exp] 55 / 1e-07 AT5G01030 291 / 1e-86 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10016455 [exp] 51 / 2e-06 AT5G59020 293 / 2e-87 Protein of unknown function (DUF3527) (.1) Lus10040721 [exp] 50 / 5e-06 AT5G59020 291 / 1e-86 Protein of unknown function (DUF3527) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G171400 [exp] 484 / 3e-165 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.010G066200 [exp] 484 / 4e-165 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.003G127500 [exp] 83 / 2e-16 AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) Potri.001G104200 [exp] 79 / 4e-15 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1) Potri.001G246200 [exp] 57 / 4e-08 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.009G039300 [exp] 55 / 1e-07 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1) Potri.006G093600 [exp] 48 / 2e-05 AT5G01030 219 / 6e-60 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF12043 [flax] [poplar] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Lus10014479 pacid=23176847 polypeptide=Lus10014479 locus=Lus10014479.g ID=Lus10014479.BGIv1.0 annot-version=v1.0 ATGGAAACTACAATTCCAGATGCACAGAACGGTACCCGGAGTGGAAATGATTCATTGGAAGACTTTTGTGATGGCAAGGAATCATCAAGAGATCCAAATG GACTTGCTATTCCAGAATCAAAATCAAGGATGAGAAGGATTAATTCCAAGAACAACTCCCTGATTTCCAAAGTCAAGCAACTGCAGAAAAGTAAAACCTG GATTAATGGTTCATTCCTCCATAGAATTGAAATAATTGATGATTGGATTCCGAAGCATATGGTGACAGTGGATGAGAAATATCTCCCCCGTTGCCTCCAT TTGATTAATGTCAGTGCTTCCAGGACATCTTCTTGCAGTGTTTCTATTGATTCATCATTGGGAAGCCTGGATGTCTGGCCTAATGGTTTCAGTCCTGTCA AAGTTGGCAGTGAGTACATTAATGATATTGCCAGGTTTGATCTCAACTGTACTACATTAGAAACTGGAAATGGGAGCTTGGTTGCTGGCCCTGCAGGCGA TTGGATTATTGTGTTTAATACTAGTTATTCATCGTTCAAGCCAGACATGGAGACCAGGTTACCAATAAACCACAGAAATGTATCAGAGACTTCGCATGAG AGGCTCTTTTCTGTATCAAGTACAAACTCTACATTTACCGACCAGTCGTCTTCTCTATCTTCATCTGCGGCTCTATCTCAGGGGATGCTCCAGTTCACAT GGAAGGGTGGGAACCCGCATTATGTTTTGTCTCTGGATGATCAAAAGTTGGTCTATGTTGCCAACTTGTGGAAGACCGAGTCAAGGGATGGTAGCAGTCT TGACTATACCTATTTGTTTCACTCCAGAAAAATTCATGAACATGATTCTCATCTTGTTGTTGTTGGTAAGATGGTGGTGTCAACTTCTTTTACCCTTTCT GAGAACAATTCAAAAACCATGGTGAGGGAGTTTGTTCTGTTTGGTGGGAAGGAGAGTTTTGTGGATATGCAATCTTCAAGCCATGAACTCGGAAAGGATA GGAGATTGTCCAGGAAAGTGACTCAAGTTTTTCGGAAGAAAAGAAGTTTGTCTAAATTTGGCGGATCAGGTATCATACTAGAGAACAGTGCTTGGGGGCC CTCCCAGGATACTGATTATTGTGTTGATTCAGTTGGTGGTTGTGATCTGTTGGAAAGGGATCTTCCTGCAAACTTCGAATCGACTGCCATTGTTGTGAAA GAACATGTCCCTCAAATTCGTCAAGAGAAAATAGGAGGCTGGGGTTTAAAATTCCTCCAGAAAGCAAGTGACAAGCAACATACTGGCAATGTAGGAGCTT CCGGTGACTGCTCAACAAGCATGGATATAATACTTCCAGCGGGTTTACATGGCGGTCCAAGAACCAGAAATTGTGGTCCTGCTAGTCTTATAGAAAGATG GCAATCCGGTGGATGCTGTGATTGTGGAGGATGGGACTTGGGGTGCCCATTAACAGTACTCAAAGGTAGGTCGAGTAACAAAGATCTCTTGTTGCCATCA GATGGTCAGGGTGACTGCAAATTGGTTGATTTGTTCATCCAGGGTTCAGAGAACACTGCACCTCCGCTGCGAATGGCCAATGTGCACGATGGTCTCTATT TCGTCCATTTTCAGTCCACACTATCGGTTTTGCAGTCTTTCGCAATTGCAGTGGCTTTTATCCATTCTCAGAGTCCGGATTTGCGACCCAAAAGTGTACA GGAAGCATGA
AA sequence Show only first row Show all	>Lus10014479 pacid=23176847 polypeptide=Lus10014479 locus=Lus10014479.g ID=Lus10014479.BGIv1.0 annot-version=v1.0 METTIPDAQNGTRSGNDSLEDFCDGKESSRDPNGLAIPESKSRMRRINSKNNSLISKVKQLQKSKTWINGSFLHRIEIIDDWIPKHMVTVDEKYLPRCLH LINVSASRTSSCSVSIDSSLGSLDVWPNGFSPVKVGSEYINDIARFDLNCTTLETGNGSLVAGPAGDWIIVFNTSYSSFKPDMETRLPINHRNVSETSHE RLFSVSSTNSTFTDQSSSLSSSAALSQGMLQFTWKGGNPHYVLSLDDQKLVYVANLWKTESRDGSSLDYTYLFHSRKIHEHDSHLVVVGKMVVSTSFTLS ENNSKTMVREFVLFGGKESFVDMQSSSHELGKDRRLSRKVTQVFRKKRSLSKFGGSGIILENSAWGPSQDTDYCVDSVGGCDLLERDLPANFESTAIVVK EHVPQIRQEKIGGWGLKFLQKASDKQHTGNVGASGDCSTSMDIILPAGLHGGPRTRNCGPASLIERWQSGGCCDCGGWDLGCPLTVLKGRSSNKDLLLPS DGQGDCKLVDLFIQGSENTAPPLRMANVHDGLYFVHFQSTLSVLQSFAIAVAFIHSQSPDLRPKSVQEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33360			Protein of unknown function (D...		Lus10014479 [exp]	0	1
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10039607 [exp]	6.6	0.8631
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	11.5	0.8755
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	15.7	0.8301
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	19.0	0.8537
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10013979 [exp]	19.8	0.8404
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	31.8	0.7964
AT5G22930			Protein of unknown function (D...		Lus10038677 [exp]	32.0	0.8454
AT1G07120			unknown protein		Lus10031863 [exp]	35.8	0.8425
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10031944 [exp]	39.0	0.8117
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	39.6	0.8416

Compare expression of checked genes

Lus10014479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.