Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20110 176 / 2e-55 Dynein light chain type 1 family protein (.1) AT1G23220 94 / 2e-24 Dynein light chain type 1 family protein (.1) AT3G16120 78 / 1e-18 Dynein light chain type 1 family protein (.1) AT1G52240 77 / 1e-18 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) AT4G27360 76 / 9e-18 Dynein light chain type 1 family protein (.1) AT4G15930 73 / 2e-16 Dynein light chain type 1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030069 [exp] 337 / 7e-119 AT5G20110 201 / 2e-65 Dynein light chain type 1 family protein (.1) Lus10034609 [exp] 111 / 3e-31 AT1G23220 181 / 4e-60 Dynein light chain type 1 family protein (.1) Lus10004252 [exp] 112 / 3e-28 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1) Lus10021793 [exp] 102 / 1e-27 AT1G23220 176 / 6e-58 Dynein light chain type 1 family protein (.1) Lus10031734 [exp] 79 / 7e-19 AT1G23220 100 / 6e-29 Dynein light chain type 1 family protein (.1) Lus10025794 [exp] 78 / 9e-19 AT1G52240 172 / 1e-57 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) Lus10035868 [exp] 75 / 1e-17 AT1G52240 174 / 2e-58 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) Lus10038566 [exp] 73 / 2e-16 AT4G27360 157 / 5e-51 Dynein light chain type 1 family protein (.1) Lus10011443 [exp] 69 / 4e-15 AT1G52240 164 / 2e-54 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067800 [exp] 129 / 4e-36 AT5G20110 142 / 3e-41 Dynein light chain type 1 family protein (.1) Potri.010G108700 [exp] 112 / 7e-32 AT1G23220 187 / 2e-62 Dynein light chain type 1 family protein (.1) Potri.008G133000 [exp] 112 / 9e-32 AT1G23220 204 / 3e-69 Dynein light chain type 1 family protein (.1) Potri.003G108700 [exp] 103 / 8e-28 AT5G20110 116 / 4e-33 Dynein light chain type 1 family protein (.1) Potri.001G124700 [exp] 102 / 2e-27 AT5G20110 116 / 3e-33 Dynein light chain type 1 family protein (.1) Potri.011G120400 [exp] 99 / 9e-26 AT1G23220 112 / 1e-32 Dynein light chain type 1 family protein (.1) Potri.001G401400 [exp] 92 / 2e-23 AT1G23220 109 / 2e-31 Dynein light chain type 1 family protein (.1) Potri.001G407900 [exp] 81 / 2e-19 AT4G27360 126 / 5e-39 Dynein light chain type 1 family protein (.1) Potri.011G126400 [exp] 79 / 1e-18 AT4G27360 117 / 2e-35 Dynein light chain type 1 family protein (.1) Potri.004G034000 [exp] 77 / 2e-18 AT4G27360 143 / 6e-46 Dynein light chain type 1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01221 [flax] [poplar] Dynein_light Dynein light chain type 1
Representative CDS sequence Show only first row Show all	>Lus10014484 pacid=23176866 polypeptide=Lus10014484 locus=Lus10014484.g ID=Lus10014484.BGIv1.0 annot-version=v1.0 ATGGCTTCTCAGGAGAAGAGAAGAAAGGGGTTCCTGATGAGATTCTACAAGTTTGGATCCAAAAGTAGCAATACATTGTCAAAGTCTCAACCACCACCAC CACCACCACCAGAAACTCATGCGGCGCTTCCAAGTATAAAGACAGTGCTGAACAGTCCACTTTCCATAAGGGCGACCCCACCATATGAAGAAACTGTGGT AAGGACTGTTCATGAAACAGTGATTCCGGGCCGGCGCGGATTTGAAGCTGGAAGAGTGCTGGAAGTGATCGAGAAGGGGAGGAAGTCAGTCTCACATGTT GAAACAAACTTGGAATCAGTAGCATTATTTCTTCAGGTGAAGGTTTTGGTGACTGACATGCCTGGATTTATGCAAGTTCATGCCTTTAGGTGTGCCAGAA GGACTTTTGATAGCTTGGAGAAATTCAGCTCTAAGCATATTGCTTATAACATCAAGAAGGGAATGGGAATTTGGATCAGAGATCCAACAGGCCATATGGA GTTTGACAAGGTGTATGGACCTTCCTGGCATTGTATTGTGGGATCCAGTTTTGGGTCATTTGTAACACATTCAACTGGCTGTTTTCTTTACTTCTCAATT GAGAATCTTTACGTATTAGTCTTCAAAACCAAAGTTCAGAAAGCTGCAGATTGA
AA sequence Show only first row Show all	>Lus10014484 pacid=23176866 polypeptide=Lus10014484 locus=Lus10014484.g ID=Lus10014484.BGIv1.0 annot-version=v1.0 MASQEKRRKGFLMRFYKFGSKSSNTLSKSQPPPPPPPETHAALPSIKTVLNSPLSIRATPPYEETVVRTVHETVIPGRRGFEAGRVLEVIEKGRKSVSHV ETNLESVALFLQVKVLVTDMPGFMQVHAFRCARRTFDSLEKFSSKHIAYNIKKGMGIWIRDPTGHMEFDKVYGPSWHCIVGSSFGSFVTHSTGCFLYFSI ENLYVLVFKTKVQKAAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	0	1
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	1.0	0.9782
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	1.4	0.9772
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	2.4	0.9736
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	2.8	0.9695
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	3.9	0.9660
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	5.5	0.9646
					Lus10024121 [exp]	5.5	0.9526
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	5.7	0.9524
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	6.0	0.9401
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013063 [exp]	6.1	0.9193

Compare expression of checked genes

Lus10014484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.