Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024215 [exp] 514 / 0 ND / Lus10033874 [exp] 474 / 6e-171 ND / Lus10025316 [exp] 462 / 9e-167 ND / Lus10039674 [exp] 457 / 1e-163 ND / Lus10002071 [exp] 451 / 4e-161 ND / Lus10010826 [exp] 449 / 3e-160 ND / Lus10015042 [exp] 447 / 1e-159 ND / Lus10003781 [exp] 446 / 2e-159 ND / Lus10010604 [exp] 445 / 6e-159 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014487 pacid=23176843 polypeptide=Lus10014487 locus=Lus10014487.g ID=Lus10014487.BGIv1.0 annot-version=v1.0 ATGCGCAGCTGTGAACATCACGCTGTGTTCCTTGAGTCCTTTGCTAATCGACCTGTGCTTCCTACCGTTCATATCGATCACACTGCCTTCCATCGATATG GTCTCAACCCGTCTGCTCTGATTGGTAACCTAGGATGGAACTCTTTAACTCTAAATCAGCGTCACCATTTTTTTCCTGCTCCTGTGCATCAATTCTATGC TAATATGCAATTAGAAGGATCTCTTCAAGATGGACGGTTCAGCACCATTGTGGCTGGTTATCATATCATTGTAACTCCTCGACTTCTTTCCGCAGTCTTG GGTGTTCCTTCAGGTGGTATGGTGGTCTTTGATGAAACTGATCTTCGCAAAATTCCCTTTGATGCATCAGTCGTTCTCGCTCGTTGGACTAATACCCCTC CAACAGCTCGTCCTCTCTCTATCATCTCAGTGCTTCCTGACTACCTTAAGACTGATTTTAGCTGCTTGATGTTTAGTACAATGGTTTCCTACGGGAATCG ATCTTTTCCTGGTGATCTTCCCTTTGGACCAGCAATTTCCTATCTACTTTTTGCTCTTGGAGTTCCAGTTCATGGAAGTCTGTTGATTGAATCACCTCTG CACAATCTTCGTCCTAGCCATGTTCTCCGGGAAGTTGGGTGGGATCACCTACAGCCTGCCTCTGGCTCAGGGGGAGAAGTTCTCCACGATCTTAACTTAT CAGATGACGAGGTGGATGATCTGGCTGCTGAGATGGAAAGGAATCTAGAGATTCAGAGTTGTCTTGATGCTGCTATTGACGATGACTTGTCTAGCCACTC TCCTAATAGTGCTTAG
AA sequence Show only first row Show all	>Lus10014487 pacid=23176843 polypeptide=Lus10014487 locus=Lus10014487.g ID=Lus10014487.BGIv1.0 annot-version=v1.0 MRSCEHHAVFLESFANRPVLPTVHIDHTAFHRYGLNPSALIGNLGWNSLTLNQRHHFFPAPVHQFYANMQLEGSLQDGRFSTIVAGYHIIVTPRLLSAVL GVPSGGMVVFDETDLRKIPFDASVVLARWTNTPPTARPLSIISVLPDYLKTDFSCLMFSTMVSYGNRSFPGDLPFGPAISYLLFALGVPVHGSLLIESPL HNLRPSHVLREVGWDHLQPASGSGGEVLHDLNLSDDEVDDLAAEMERNLEIQSCLDAAIDDDLSSHSPNSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014487 [exp]	0	1
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	5.1	1.0000
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	5.1	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	6.7	1.0000
					Lus10033089 [exp]	9.2	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10018417 [exp]	9.9	1.0000
					Lus10024550 [exp]	10.0	1.0000
					Lus10035617 [exp]	10.6	1.0000
AT5G52450			MATE efflux family protein (.1...		Lus10019470 [exp]	10.8	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	11.4	1.0000
AT5G35390			Leucine-rich repeat protein ki...		Lus10021595 [exp]	16.9	1.0000

Compare expression of checked genes

Lus10014487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.