Plant FIBer expression Database

Lus10014488 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80180 64 / 8e-14 unknown protein
AT1G15400 64 / 1e-13 unknown protein
AT5G20100 48 / 1e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030064
[exp]
197 / 1e-65 AT1G80180 76 / 5e-18 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G062200
[exp]
82 / 8e-21 AT1G15400 79 / 1e-19 unknown protein
Potri.001G172100
[exp]
73 / 2e-17 AT1G15400 100 / 3e-28 unknown protein
PFAM info
Representative CDS sequence
>Lus10014488 pacid=23176851 polypeptide=Lus10014488 locus=Lus10014488.g ID=Lus10014488.BGIv1.0 annot-version=v1.0
ATGGAGCTTGGCGGTCTACAGAGATCTGCTACTTCCTACCGGCGGCAGGGATCATCCGGCCTGATTTGGGACGACAAGCTCATCGCCGAATTCTGCAGTC
AGGCCGAAGCCGAGAAAGCCGCCGCAGCTGCCGCCGCCGCAGGCGGTGGTGGAGGAGATCTACCGTTGACCGCTCCCGATGCTCTTTCCGATACCACAAA
CCGCCAGTCCAAAGCCGATACGGTTTCTCCGGAACCAGGGAAGATGCGGCGCAGCCACTCAGCCGGGAGTCGCGCCTACCGGGCTCTCAAGGTCGCTTCG
TCGGCGAACCTCGATCCTCCTTCTCCGAAGGTCTCCACCTGTGCCTTCTGCGGATTGTTCGCAAAACCTAGTTCATCTGCCGATGGTCGCCGCCGCCGCC
GGCAGCAGCCGCAGAAGCAGATGAAGAAAACATGTAAGCGTACTTGA
AA sequence
>Lus10014488 pacid=23176851 polypeptide=Lus10014488 locus=Lus10014488.g ID=Lus10014488.BGIv1.0 annot-version=v1.0
MELGGLQRSATSYRRQGSSGLIWDDKLIAEFCSQAEAEKAAAAAAAAGGGGGDLPLTAPDALSDTTNRQSKADTVSPEPGKMRRSHSAGSRAYRALKVAS
SANLDPPSPKVSTCAFCGLFAKPSSSADGRRRRRQQPQKQMKKTCKRT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80180 unknown protein Lus10014488
[exp]
0 1
AT5G16370 AAE5 acyl activating enzyme 5 (.1) Lus10039161
[exp]
2.4 0.8454
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Lus10018705
[exp]
3.5 0.8613
AT4G31750 WIN2 HOPW1-1-interacting 2 (.1) Lus10026239
[exp]
3.5 0.8768
AT1G11360 Adenine nucleotide alpha hydro... Lus10018515
[exp]
4.2 0.8411
AT2G01410 NHL domain-containing protein ... Lus10031811
[exp]
8.8 0.8267
AT3G05500 Rubber elongation factor prote... Lus10015171
[exp]
9.5 0.8192
AT5G22360 ATVAMP714 vesicle-associated membrane pr... Lus10034189
[exp]
11.6 0.8421
AT5G28040 GeBP DNA-binding storekeeper protei... Lus10000940
[exp]
13.0 0.8421
AT5G03370 acylphosphatase family (.1) Lus10026533
[exp]
13.4 0.8271
AT5G03990 unknown protein Lus10016362
[exp]
13.7 0.8407

Lus10014488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.