Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02160 174 / 5e-47 C3HZnF CCCH-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030063 [exp] 788 / 0 AT2G02160 126 / 3e-30 CCCH-type zinc finger family protein (.1) Lus10043286 [exp] 500 / 3e-174 AT2G02160 171 / 2e-46 CCCH-type zinc finger family protein (.1) Lus10019430 [exp] 461 / 6e-159 AT2G02160 173 / 4e-47 CCCH-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098200 [exp] 188 / 9e-52 AT2G02160 349 / 3e-110 CCCH-type zinc finger family protein (.1) Potri.008G144200 [exp] 187 / 2e-51 AT2G02160 383 / 4e-123 CCCH-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10014490 pacid=23176863 polypeptide=Lus10014490 locus=Lus10014490.g ID=Lus10014490.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGTTGCTAAAGCGAAATACCGACTGTGTTTACTTCCTCGCTTCTCCTCTCACTTGCAAGAAGGGAGCCGAGTGTGAGTACCGGCACAGCG ATATGGCAAGGCTAAACCCTAGGGATTGCTGGTACTGGTTGTCTGGTTCCTGTCTTAACCCAACCTGCGCCTTCAGACATCCTCCTCTTGAAAATACAAC TGAAGGGCCTTCAGAATCTGGTTTAGTGCCTAGTCAGGTTAACCAGTCGACTAACAAGAATGCTGTCCCATGCTATTTCTACTTCCAAGGTTTCTGCAGT AAAGGTGACACGTGCACCTTTTTGCATGCTCCTCATGGCAGCACGTCTACTGCAAAATCTGTTAAAATGCCTTCTACAAACTCAGATGGTCATCCAGTGA ACAGTAGTCAATCATCCGGAAGTAAAACTGCACTTGCACCAACCGAGGTGCAAAATAATCTGCCCACAACAGCTCAGAAGCCATCAGTGGATGTGAAATT GCAATCTAAGGAGGAAATGCGGCAGCAAGCCCCTGATGTGGAAGTTCAAAAGAGTTCCCCATTGCAGATTGCTGAGACCAATGATGAGGAAGCTTGTGTT TTTGGGACTGATACCTTGTTGACACTAGAGAGTTATAATGAGGATATATCATACATGAGTTCTGATTTGAATTCAGAAGACTATGCTGATGATCACATAG AGCAAGAGCCAAGGGAATCATCACCGGGTTTTGACGTTCTTGTGGATAATGAAGAGGGGGAGAATCTATGCTACGAGGATGAGCAAGATTATGTGGTGTC CCTTGATAGAGAACAAAGGGTTGTGGATAATCAATTTGTCGAGTATAATTTTGAAGAGCCAGATGAGTACGTACGTTTGGGATTCAGTCAGAGGAGAGAA CTAGATCTCCGAGACCACCTGAGGAAACATAGGGCTGTTGATGGCGAGCAGCTCATTAGTAGATCAATGAGAAGGCGAGAGTCATCCCTTGTATATGAGC CATACCATCTAAGCAGGGGGAGCCATGACAAACAATATGAGCATGGACTGAATGAACAGAACAGGCGGAGCCATGAGAGACCATATAAGCATGGAGTGAG CAGACGAATCAAGGAGAACCATGGCAGACGATACGAGCAAGGACCAAGTGAACGACTACATGGAAGATTAGTATGTGATGTTGGGAGGACTAGCATTGAA TTCGTGAATGGTTATGGAATTTGTGGGAATTTTGCAAGTGAGTGTGGCTGGATGAAGCACTTGCAGTTTGACAGGTCTATGCTACACAGGAAAAGGAGGG ACCATAGGAGATATTGCGTTCCATATGAGTTCGGGGGGAGACCAGTTGGTAGAGAGAGGAGGTCAAGTGAGGAAGGGCGTGGTGAATTTTCCAGGCCGAA GAGCCTTTCTCAGATACGAGAAGAGAAGAGAAGGTGTGATCAAAATGGGTATTCCATTGAGAGAGATGAGGATATGACTGGAACGGAGTCAGCAGCAAGT AATTTCGAAGGTCCGAAACCTCTAAACGAAATCCTGAAGGATAAAAAGAAGCTTGTGGAAGTATGA
AA sequence Show only first row Show all	>Lus10014490 pacid=23176863 polypeptide=Lus10014490 locus=Lus10014490.g ID=Lus10014490.BGIv1.0 annot-version=v1.0 MEEELLKRNTDCVYFLASPLTCKKGAECEYRHSDMARLNPRDCWYWLSGSCLNPTCAFRHPPLENTTEGPSESGLVPSQVNQSTNKNAVPCYFYFQGFCS KGDTCTFLHAPHGSTSTAKSVKMPSTNSDGHPVNSSQSSGSKTALAPTEVQNNLPTTAQKPSVDVKLQSKEEMRQQAPDVEVQKSSPLQIAETNDEEACV FGTDTLLTLESYNEDISYMSSDLNSEDYADDHIEQEPRESSPGFDVLVDNEEGENLCYEDEQDYVVSLDREQRVVDNQFVEYNFEEPDEYVRLGFSQRRE LDLRDHLRKHRAVDGEQLISRSMRRRESSLVYEPYHLSRGSHDKQYEHGLNEQNRRSHERPYKHGVSRRIKENHGRRYEQGPSERLHGRLVCDVGRTSIE FVNGYGICGNFASECGWMKHLQFDRSMLHRKRRDHRRYCVPYEFGGRPVGRERRSSEEGRGEFSRPKSLSQIREEKRRCDQNGYSIERDEDMTGTESAAS NFEGPKPLNEILKDKKKLVEV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	0	1
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	4.7	0.7643
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	6.6	0.7824
AT5G66540			unknown protein		Lus10042107 [exp]	9.5	0.7196
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	9.7	0.7402
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	15.1	0.7453
AT1G61470			Polynucleotidyl transferase, r...		Lus10001651 [exp]	15.4	0.7338
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	16.2	0.7310
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	18.8	0.6510
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	19.4	0.7050
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	23.2	0.7342

Compare expression of checked genes

Lus10014490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.