Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) AT5G17770 203 / 2e-64 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT1G37130 141 / 1e-37 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 141 / 1e-37 GNR1, NIA1 nitrate reductase 1 (.1) AT1G20020 49 / 3e-06 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT1G15140 47 / 4e-06 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030059 [exp] 550 / 0 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Lus10026774 [exp] 217 / 1e-69 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 211 / 3e-67 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10020310 [exp] 210 / 6e-67 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 210 / 7e-67 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10033405 [exp] 198 / 3e-62 AT5G17770 359 / 2e-125 NADH:cytochrome B5 reductase 1 (.1) Lus10034869 [exp] 159 / 7e-47 AT5G17770 280 / 3e-94 NADH:cytochrome B5 reductase 1 (.1) Lus10035402 [exp] 145 / 5e-39 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10038977 [exp] 144 / 1e-38 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218600 [exp] 463 / 4e-166 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.004G194400 [exp] 213 / 2e-68 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 210 / 4e-67 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 210 / 6e-67 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 207 / 8e-66 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.005G172400 [exp] 167 / 2e-46 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 159 / 5e-44 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.010G116500 [exp] 45 / 3e-05 AT1G15140 368 / 1e-128 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014491 pacid=23176845 polypeptide=Lus10014491 locus=Lus10014491.g ID=Lus10014491.BGIv1.0 annot-version=v1.0 ATGGAGCTTTGTCCTATACCGTTGCCCGTTGGGAATTCCATGGCCGTTCACTTGGATGAAGCAAAAGAAGAGGTTGGTCCCAAAGCTGCTCTTAATCCGA ATAAGTGGATCGAGTTCAAGCTTCAAGACACTGCAATTGTTAGTCACAATACTCAGCTGTTCAGGTTTTCGTTTGATCCTTCTTCCAAGCTCGGTTTGGA CATTGCATCTTGCCTCCTTACTAGGTATCCGCTAGAAACAACTGCCGAAGGGAAAACTAAATATGTAATACGCCCATATACTCCAATTTCAGATCCAGAA GCAAAGGGATACTTTGACTTATTGATTAAGGTGTATCCAGACGGAAAAATGAGTCAGCATTTGGCTAGTTTGAAGCCTGGTGATGTTGTCGAGGTGAAAG GGCCAATTCAGAAAATTAGATACTCTCCCAATATGAAGAAGCACATTGGCATGATTGCAGGTGGCAGTGGCATTACGCCAATGCTACAAGTAATTGAGGC TATCCTAAAGAATCCAGATGACAACACCCAGGTGTCATTGCTTTATGCCAATGTCTCACCTGATGACATACTGCTTAAGCAAAAACTCGACTACCTAGCT ACTAGGCACCCAAATTTGAAGGTTTTCTACACTGTAGACAATCCAACAAAGACCTGGAAAGGAGGCGTGGGCTACATATCAAAAGAGATGGCTCTTAAAG GCCTGCCTGTTCCTGGGGATGACACAATCATAATGGTATGCGGACCGCCTGGAATGATGAAGCACATATCAGGGGAAAAGGTTAAAGCGGAACAAGGAGA GCTGAGTGGCATCCTTAAAGAACTAGGATACACAGAAGAAATGGTTTACAAGTTCTAG
AA sequence Show only first row Show all	>Lus10014491 pacid=23176845 polypeptide=Lus10014491 locus=Lus10014491.g ID=Lus10014491.BGIv1.0 annot-version=v1.0 MELCPIPLPVGNSMAVHLDEAKEEVGPKAALNPNKWIEFKLQDTAIVSHNTQLFRFSFDPSSKLGLDIASCLLTRYPLETTAEGKTKYVIRPYTPISDPE AKGYFDLLIKVYPDGKMSQHLASLKPGDVVEVKGPIQKIRYSPNMKKHIGMIAGGSGITPMLQVIEAILKNPDDNTQVSLLYANVSPDDILLKQKLDYLA TRHPNLKVFYTVDNPTKTWKGGVGYISKEMALKGLPVPGDDTIIMVCGPPGMMKHISGEKVKAEQGELSGILKELGYTEEMVYKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10014491 [exp]	0	1
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10031932 [exp]	10.5	0.6411
AT5G51160			Ankyrin repeat family protein ...		Lus10029006 [exp]	16.9	0.6793
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	23.8	0.6230
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	25.1	0.6166
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10009617 [exp]	27.9	0.6374
					Lus10016386 [exp]	30.4	0.5691
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	31.1	0.6226
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10030013 [exp]	39.4	0.5990
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	44.1	0.5803
AT5G40960			Protein of unknown function (D...		Lus10032031 [exp]	44.9	0.6153

Compare expression of checked genes

Lus10014491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.