Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15410 273 / 2e-90 aspartate-glutamate racemase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030057 [exp] 526 / 0 AT1G15410 277 / 9e-92 aspartate-glutamate racemase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G061800 [exp] 284 / 3e-92 AT1G15410 387 / 4e-132 aspartate-glutamate racemase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0399 [flax] [poplar] Asp-glut_race PF01177 [flax] [poplar] Asp_Glu_race Asp/Glu/Hydantoin racemase
Representative CDS sequence Show only first row Show all	>Lus10014492 pacid=23176849 polypeptide=Lus10014492 locus=Lus10014492.g ID=Lus10014492.BGIv1.0 annot-version=v1.0 ATGACAATGTTGTTCCAGAATCTGACTTCTTCTGCACAATTCTCTTCGCTTCTTCTTCACACATATATGGAAAGTTGCAACAGTTCACTTCTTTCAAGCT CAAGAGGATCATCATCATCATTAAGAAGGAATCACAAACTCCACTTACCGATGAGTCACCGGGGCAACACTGTGGGGATCATCGCAGGAGTTTCGGTCTT GTCTACTCTTACTTTCCTGGAAAAGCTAATCTGGTGGAGCTTCAAAGAATCTCAAGACTGCCCACCCTTCATTCTCACTAACCATCCTACAACAGTCACC GCCAACTTAATGTTCATCCACCACTCATTCTGTAGCAAAAAAGATGTTAAAACAACCAGGCTCAATCTCAATCAGATTATTGAGAACTTACGCGGAAAGA GGCTGTTCCTGGAGCAGTCTGGAGTTTGCTGTCTCGTTATGCCGTGTCACGTATCACATCAATGGTTTAGCGAAATATACAGAGGAAGTCTTTTGCCTTT CTTTCACTTAGGTGACTGTGTTGTTAGTGTGCTCAAGGATGCGAATCTGAAGCCAATGGTTTGTGGAAACAGTATCAGGATTGGTGTTCTTGCCACTAAT CCAATCCTGCAGGCTGGTTTTTACCAGGAGATATTGCAGAGCCAGGGGTTTGAGGTGGTGGTGCCAGATAAAGGAACAGTGGATCACATTCTGATCCCAG GAATTGAAGCACTGGGCAAAGGGGACATGGAAGGAGCTCAAGTCCTTGTAAGAATAGCAATTCAGCTTCTTCTTGTGAAGGGAGTTAACATTGTAATCCT TGCTTCTGATGAGATTCAAGGACTTCTTCCCAACGACGATCCTCTTCTGCAGAAATGCATTGATCCCATTGATGCCTTGGCAAAGTCAGTAGTATGGTGG GCTAAATGGAGAGGGAAAGATTCAGGGGAATGCATAAACAGGATCATATGA
AA sequence Show only first row Show all	>Lus10014492 pacid=23176849 polypeptide=Lus10014492 locus=Lus10014492.g ID=Lus10014492.BGIv1.0 annot-version=v1.0 MTMLFQNLTSSAQFSSLLLHTYMESCNSSLLSSSRGSSSSLRRNHKLHLPMSHRGNTVGIIAGVSVLSTLTFLEKLIWWSFKESQDCPPFILTNHPTTVT ANLMFIHHSFCSKKDVKTTRLNLNQIIENLRGKRLFLEQSGVCCLVMPCHVSHQWFSEIYRGSLLPFFHLGDCVVSVLKDANLKPMVCGNSIRIGVLATN PILQAGFYQEILQSQGFEVVVPDKGTVDHILIPGIEALGKGDMEGAQVLVRIAIQLLLVKGVNIVILASDEIQGLLPNDDPLLQKCIDPIDALAKSVVWW AKWRGKDSGECINRII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15410			aspartate-glutamate racemase f...		Lus10014492 [exp]	0	1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10037200 [exp]	10.2	0.8290
AT2G48030			DNAse I-like superfamily prote...		Lus10008177 [exp]	15.8	0.8361
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10022851 [exp]	23.5	0.8333
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020830 [exp]	24.2	0.7927
					Lus10020978 [exp]	28.5	0.8219
					Lus10007554 [exp]	29.8	0.7996
AT2G35880			TPX2 (targeting protein for Xk...		Lus10016193 [exp]	35.9	0.8161
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10003719 [exp]	52.4	0.8093
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	53.4	0.7827
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001542 [exp]	63.2	0.7981

Compare expression of checked genes

Lus10014492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.