Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20070 572 / 0 ATNUDX19, ATNUDT19 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) AT2G42070 45 / 5e-05 ATNUDX23, ATNUDT23 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030056 [exp] 761 / 0 AT5G20070 594 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Lus10029289 [exp] 47 / 1e-05 AT2G42070 355 / 5e-124 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070400 [exp] 589 / 0 AT5G20070 609 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Potri.006G154200 [exp] 581 / 0 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Potri.006G192800 [exp] 52 / 4e-07 AT2G42070 351 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) Potri.016G045300 [exp] 47 / 8e-06 AT2G42070 353 / 3e-123 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain CL0261 [flax] [poplar] NUDIX PF09296 [flax] [poplar] NUDIX-like NADH pyrophosphatase-like rudimentary NUDIX domain CL0167 [flax] [poplar] Zn_Beta_Ribbon PF09297 [flax] [poplar] zf-NADH-PPase NADH pyrophosphatase zinc ribbon domain
Representative CDS sequence Show only first row Show all	>Lus10014493 pacid=23176871 polypeptide=Lus10014493 locus=Lus10014493.g ID=Lus10014493.BGIv1.0 annot-version=v1.0 ATGTCGGTCAACTTCAAAACCCACGCATTCGCCGGAAACCCTCTTAGTTCCGGCAGTCCATTTCCCCCGTCATCAGCTCTTGAAACAATCAAAAGTCGGC TCCTAGAACGCAACGATTCCACCCACCAATTGCTTTCTCCTAGTTTCCAGGTCTTGCCCTTCAGGAAGGGCCGGCCTCTTGCGTCTTCCGCCGACGGAGA TTCAGCCCCAATTTGGCATCTGGCTTGGATTGGACTTGCTGATTGCAGAGGATTTTTAGTCAAGTCTGGTGTTGAATTGAGTGCTGAGAGCTTGGTTTAT CTAGGGTTTAGAAGTGAGGAGGATGTGGTTTACTGGGCAATCGATGTTTCCAGTGGAGATAGTCTGGTTACGGAATTTGGTGGCAAGCGGCTCTGCTTTG TGGAGTTGAGGACTCTCATGGTGGCTGCCGATTGGACTGATGAACGAGCCATGGCGGATCTGGCTATTGCTGGTCATGCGAGAGCATTGTTAGAATGGCA CAAGAAAAGTCGGTTTTGTGGATCCTGTGGAGCAAATACGATCCCTATAGAAGGTGGCAGAAGGAAACAATGCTTCAATGAGATATGCAAATCCAGGGTC TATCCTCGTATTGATCCAGTTGTCATCATGTTGGTTATTGACAAAGAGAACGATAGAATCCTTTTAAGCAGACAATCAAGATTTGTACCGCGAATGTGGA GTTGCCTAGCTGGATTTATAGAGCCTGGAGAAAGCTTAGAAGAGGCAGTGAGGAGAGAAACTTTTGAAGAGACTGGTATTGAAGTAGAACAAGTTGTCTA TCATAGTTCTCAGCCATGGCCTGTCGGCCCCAGCAGCATGCCATGCCAGCTGATGGTAGGTTTCTTTGCCTATGCAAAGACACTGGACATAAATGTGGAC AAAACAGAGTTAGAAGATGCTAAGTGGCACAGTCGAGAAGACGTCCAGAAAGCACTGTCGGTAGCAGAGTACAAGAAAGCACAAAAAACAGCAGCCGCCA AGGTGGAACAGATGTGCAAGGGAGTTGAGAAAGGTCAGAGTCTGTCTGCAGATTTTAATGTGGAAAGTGGCGAACTTGCTCCAATGTTCTTCCCGGGCCC TTTCGCAATTGCCCATCACCTCATCTCGTCATGGGTTAACGGACAATCCACTATTAGTGGTGGACTTCAAGCCAAGCAAATTGGTTCTTCTATGTCAAAT CTATAG
AA sequence Show only first row Show all	>Lus10014493 pacid=23176871 polypeptide=Lus10014493 locus=Lus10014493.g ID=Lus10014493.BGIv1.0 annot-version=v1.0 MSVNFKTHAFAGNPLSSGSPFPPSSALETIKSRLLERNDSTHQLLSPSFQVLPFRKGRPLASSADGDSAPIWHLAWIGLADCRGFLVKSGVELSAESLVY LGFRSEEDVVYWAIDVSSGDSLVTEFGGKRLCFVELRTLMVAADWTDERAMADLAIAGHARALLEWHKKSRFCGSCGANTIPIEGGRRKQCFNEICKSRV YPRIDPVVIMLVIDKENDRILLSRQSRFVPRMWSCLAGFIEPGESLEEAVRRETFEETGIEVEQVVYHSSQPWPVGPSSMPCQLMVGFFAYAKTLDINVD KTELEDAKWHSREDVQKALSVAEYKKAQKTAAAKVEQMCKGVEKGQSLSADFNVESGELAPMFFPGPFAIAHHLISSWVNGQSTISGGLQAKQIGSSMSN L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	0	1
AT1G62870			unknown protein		Lus10004325 [exp]	1.0	0.9271
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	2.4	0.8947
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	4.2	0.8934
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	5.5	0.8722
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	6.0	0.8844
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Lus10010567 [exp]	6.2	0.8449
AT1G71900			Protein of unknown function (D...		Lus10019952 [exp]	9.6	0.8347
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	11.0	0.8659
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10027171 [exp]	12.0	0.8510
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	14.7	0.8590

Compare expression of checked genes

Lus10014493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.