Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15050 646 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 629 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 506 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 479 / 3e-168 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 470 / 2e-164 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 466 / 6e-163 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 440 / 5e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 400 / 5e-138 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 398 / 4e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 388 / 7e-133 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032189 [exp] 844 / 0 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 502 / 5e-177 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 499 / 6e-176 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 492 / 2e-173 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 491 / 6e-173 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 465 / 2e-162 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 454 / 5e-158 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020316 [exp] 427 / 1e-147 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 422 / 3e-146 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075600 [exp] 697 / 0 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 683 / 0 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 494 / 1e-174 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 493 / 6e-174 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.009G003300 [exp] 490 / 2e-172 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 486 / 1e-170 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 467 / 3e-163 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 450 / 2e-156 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 437 / 3e-152 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 401 / 3e-138 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10014495 pacid=23170936 polypeptide=Lus10014495 locus=Lus10014495.g ID=Lus10014495.BGIv1.0 annot-version=v1.0 ATGAAGCGGCTGAAGAACTACTACATGCATTTCCGGCACCACCACCAGGCGGCGGATAGGCGGCGCTGGATCTTCCCTCTTGCGATCGGCTCCATATTCT CTCTCTTCATTCTCTTCCTAACTACCACCGTCTCTTCCCCTGCCGGCGTCCCAATCTTCCCCTTCTACCGCTCAATGTACTCTTCCTTTAGCTCCAAATT CGTCGAGCCCAAGCTGCAGCCCATCCCGCTCTCCGATCTCCCTCCGCCGCCGCGATTTGCCTACTTGATCTCCGGCTCCAAGGGCGATGGCGACATGCTC AAGCGAACCCTACTTGCTCTGTACCACCCTAATAACCGCTACGTGGTGCATTTGGACGCCGAGTCCTCCCCTGACGAGCGGACGGATCTGGCCGATTTCG TGAGGGACCATAGGGTTTTTGTCAAGTTTGGGAATGTGAAGATGATTGCCAAGGCTAACCTCGTCACTTACAGAGGTCCCACCATGGTTGCCAATACGCT TCACGCTGCGGCGATCTTGCTGAGGGAAGGATCCGATTGGGATTGGTTCATTAACCTCAGTGCTTCCGACTATCCGCTCGTGACTCAGGACGATCTGCTG CACGTGTTCTCTTATCTGCCGCGGGATCTGAATTTCATCGATCATACCAGCGACATTGGGTGGAAAGAGTTCCAGAGGGCAAAGCCTATAATTGTAGATC CTGGGTTGTATATGACCAAGAAGTCTGATGTTTTCTGGATCACTCAGAGGAGGAGTGTGCCAACAGCTTTTAAGCTCTTCACAGGTTCTGCTTGGATGGT GCTATCTCGGCCTTTTGTAGACTACACAATATGGGGTTGGGACAATTTACCTCGGACAGCATTAATGTATTATTCGAACTTCATATCTTCTCCAGAAGGC TACTTCCACACGGTCATTTGCAATGCTCAGGAGTTTCGCAACACCACCGTGAACAGTGATCTCCACTTCATCTCCTGGGACAACCCTCCAAAGCAACATC CTCACCACTTAACGGCCGAAGACATGCCAAAGATGGTGAATAGCAACGCTCCCTTTGCTAGGAAGTTCAGGGCAAACGATCCCGTTCTCGATAGAGTGGA CACCGAACTCTTGTCCAGGGGTCCTGGCATGTTTACCCCCGGTGGTTGGTGCATAGGTAGCCGGGAAAACGGAACTGATCCTTGCTCTAGGATCGGTAAC ACCACGGTTGTCAGACCTGGCCCTGGAGCTAAGAGACTGGAGACTCTGATAAGCTCTCTTATGTCTGCTGAAAAGTTCCGACCACGACAGTGCAAGTGA
AA sequence Show only first row Show all	>Lus10014495 pacid=23170936 polypeptide=Lus10014495 locus=Lus10014495.g ID=Lus10014495.BGIv1.0 annot-version=v1.0 MKRLKNYYMHFRHHHQAADRRRWIFPLAIGSIFSLFILFLTTTVSSPAGVPIFPFYRSMYSSFSSKFVEPKLQPIPLSDLPPPPRFAYLISGSKGDGDML KRTLLALYHPNNRYVVHLDAESSPDERTDLADFVRDHRVFVKFGNVKMIAKANLVTYRGPTMVANTLHAAAILLREGSDWDWFINLSASDYPLVTQDDLL HVFSYLPRDLNFIDHTSDIGWKEFQRAKPIIVDPGLYMTKKSDVFWITQRRSVPTAFKLFTGSAWMVLSRPFVDYTIWGWDNLPRTALMYYSNFISSPEG YFHTVICNAQEFRNTTVNSDLHFISWDNPPKQHPHHLTAEDMPKMVNSNAPFARKFRANDPVLDRVDTELLSRGPGMFTPGGWCIGSRENGTDPCSRIGN TTVVRPGPGAKRLETLISSLMSAEKFRPRQCK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10014495 [exp]	0	1
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	1.7	0.9416
AT4G37820			unknown protein		Lus10019253 [exp]	3.5	0.9014
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	5.1	0.9243
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	6.6	0.9140
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	7.7	0.9159
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	8.9	0.9026
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	9.2	0.9075
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	10.4	0.9048
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10022862 [exp]	10.7	0.8849
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031743 [exp]	11.0	0.9025

Compare expression of checked genes

Lus10014495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.