Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73160 612 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT4G19460 439 / 2e-150 UDP-Glycosyltransferase superfamily protein (.1) AT5G59070 360 / 1e-119 UDP-Glycosyltransferase superfamily protein (.1) AT3G45100 55 / 6e-08 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G01220 54 / 1e-07 SQD2 sulfoquinovosyldiacylglycerol 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032187 [exp] 907 / 0 AT1G73160 615 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10034760 [exp] 486 / 1e-168 AT4G19460 636 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033297 [exp] 479 / 5e-166 AT4G19460 620 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016475 [exp] 382 / 1e-128 AT5G59070 602 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10040757 [exp] 383 / 4e-126 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024892 [exp] 61 / 1e-09 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022925 [exp] 57 / 1e-08 AT3G45100 536 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097000 [exp] 685 / 0 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G128300 [exp] 485 / 7e-169 AT4G19460 645 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G105500 [exp] 474 / 1e-164 AT4G19460 664 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G038400 [exp] 389 / 3e-131 AT5G59070 609 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G130000 [exp] 57 / 1e-08 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.016G112600 [exp] 50 / 3e-06 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.006G097600 [exp] 48 / 1e-05 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10014499 pacid=23170931 polypeptide=Lus10014499 locus=Lus10014499.g ID=Lus10014499.BGIv1.0 annot-version=v1.0 ATGGGATGGAAGCACAAACACCACAATTCCAGACCCAATTACCCAATCCATCTAACAAACTACTCCACAATCCTCACCTTCGCAGCCTTTCTCTTCACTT CCCTCTTCCTACTCCTCCGATTCCAATACCCCTCCTTCGAACAACAACCGTTCGCCGGCGACCTCCGAGACGCCGATTTCCCCTGGAACAAACTCTGCTT CGGGAACAGCGGCTCGTCCGAGAAACTAAAAATCGCCGTCTTTTCAAAATCATGGCCGATCGGAGCTTCACCCGGAGGAATGGAACGCCACGCGGCCACT CTCTACACCGCGTTAGCAAAAAAGGGCCACGAGATCCACGTCTTCACCGTCCCCTCAGACCGTCGGCCCCACCCCGAAATCCACGAGGCTAATCTCCACG TGTACTTCGCGGCGAACGAACACGGCTCGGTCAACAACTCGCGGGCGTACGAGATTTTCAAATCGGTCGACGCCGTGTCGCCGACCTTCGACTACGTGCA CAGCGAGAGCGTGTCCCTGCCGCACTGGAGGGCGAAGTTGGTTTCGAATCTGGCGGTGACGTGGCACGGGATCTGGTACGAGATCATGCACTCGAAGCTG TTCGAGGAGCTGTTCACGAACCCTAACGGAGGAGGAGGAGAAGAGCTGCCGTTGACGGCGGAGTTGCAGGAGGCGATGCCGAGGTTGCTGGATGAGATTA GGTTTTTCAGGAGCTATAAGCAGCATATCTGCATCAGTAATAGCGCCGGGGAGGCTTTGGTGAAGGTTTATCAGGTGGATCGGAGGAATGTTCATGTGAT TCTGAACGGAGTTGATGATTCTCAGTTCGTTCATGATCCCAAAGCAGGGGAAGTTTTCAGGGAGCGATACGGAATTCCAGGCAATGCGACCATAGTAATG GGAGTGGCAGGCAGGCTAGTTAGGGACAAAGGCCATCCAATCCTCTACGAGGCACTCTCCTCGATGCTCGCGCGACATCCAGGAGTTTGCCTCGTGGTCG CAGGATCGGGCCCCTGGGGGCGCCGGTACGCCGAACTGGGTCCGAGCGTGAAGGTATTAGGCCCGCTGGAACCGTCCCAGCTTTCGCAATTCTACAACGC AATCGACGTGTTTGTGAACCCGACGATGAGGCCTCAGGGGCTTGATTTGACGTTGATCGAAGCCATGCATTGCGGGAAGCCCGTTTTAACTCCCAACTAC CCCAGCATTGTGGGGACGGTTGTGGTTGACCAGCGGTACGGCTACACTTTCTCGCCGAATGTGAAGTCGTTGGTTCGGGCTTTGGAGGAGCTGATCGCGG ATGGGTCTCGGGTGCTGCAGAGGAAAGGCATGGCGTGCAAGAGTTATGCGAGTTCGATGTTTACTGCTGCGAAAATGGCGTCGGCTTACGAAAGGTTCTT CCTTTGTATGAAGAATAGTAGATACTGTCACTACCCTCTTCCCACAGATCACTGCTGA
AA sequence Show only first row Show all	>Lus10014499 pacid=23170931 polypeptide=Lus10014499 locus=Lus10014499.g ID=Lus10014499.BGIv1.0 annot-version=v1.0 MGWKHKHHNSRPNYPIHLTNYSTILTFAAFLFTSLFLLLRFQYPSFEQQPFAGDLRDADFPWNKLCFGNSGSSEKLKIAVFSKSWPIGASPGGMERHAAT LYTALAKKGHEIHVFTVPSDRRPHPEIHEANLHVYFAANEHGSVNNSRAYEIFKSVDAVSPTFDYVHSESVSLPHWRAKLVSNLAVTWHGIWYEIMHSKL FEELFTNPNGGGGEELPLTAELQEAMPRLLDEIRFFRSYKQHICISNSAGEALVKVYQVDRRNVHVILNGVDDSQFVHDPKAGEVFRERYGIPGNATIVM GVAGRLVRDKGHPILYEALSSMLARHPGVCLVVAGSGPWGRRYAELGPSVKVLGPLEPSQLSQFYNAIDVFVNPTMRPQGLDLTLIEAMHCGKPVLTPNY PSIVGTVVVDQRYGYTFSPNVKSLVRALEELIADGSRVLQRKGMACKSYASSMFTAAKMASAYERFFLCMKNSRYCHYPLPTDHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73160			UDP-Glycosyltransferase superf...		Lus10014499 [exp]	0	1
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	3.0	0.9102
AT3G63500			Protein of unknown function (D...		Lus10019718 [exp]	3.2	0.9080
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	9.2	0.9001
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	10.7	0.9045
AT2G37470			Histone superfamily protein (....		Lus10023753 [exp]	10.9	0.8965
					Lus10022462 [exp]	12.0	0.8823
AT4G29330		DER1	DERLIN-1 (.1)		Lus10012934 [exp]	15.6	0.8937
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	17.2	0.8753
AT4G23760			Cox19-like CHCH family protein...		Lus10032354 [exp]	19.6	0.8663
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	19.6	0.9003

Compare expression of checked genes

Lus10014499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.