Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 637 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 594 / 0 EFR EF-TU receptor (.1) AT3G47090 582 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 563 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 544 / 7e-178 Leucine-rich repeat protein kinase family protein (.1) AT1G28440 356 / 2e-107 HSL1 HAESA-like 1 (.1) AT2G24130 355 / 4e-107 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 360 / 6e-107 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G26330 349 / 7e-105 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 352 / 1e-104 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030903 [exp] 1209 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 1148 / 0 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1125 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1118 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1116 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030636 [exp] 1069 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1058 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016896 [exp] 1037 / 0 AT3G47570 714 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1023 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228200 [exp] 804 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 803 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 780 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 771 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 767 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 765 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 761 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 752 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 747 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 739 / 0 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014500 pacid=23170960 polypeptide=Lus10014500 locus=Lus10014500.g ID=Lus10014500.BGIv1.0 annot-version=v1.0 ATGGTGGGTTCAGGGAGTTTGATGAGTGTACAATATGCTGCAGTTGCTGCAGCTCTACTTGTTCACTTGATGTGCTTTTGCTGTCAGGCTTCCTCTTCTG GAATTCGGTTGAGAAATGAAACTGATCGTTTAGCTTTGCTCGAGTTCAAGTCCATGGTGTTTCCTGCAGATCCTTCGGCGGGGTCTTTGAGCTCGTGGAA TGATTCTACTCATTTCTGCGAGTGGTATGGTGTGTCTTGTTCCAAAAGGCATTACGGTAGAGTCACTGCCTTAAACTTGTCGTCTCTGGGACTATATGGT TCTATCTCACCGCACGTTGGCAATCTCAGCTTCCTGAGAATGTTGAATCTTTACAACAACAGCTTCGTCGGGGAAATACCTCTTGAAATCGGCCGTCTGG GCAGATTGCAGCAGTTGGTGCTTTACAACAACTCGCTCGGTGGCGAGATCCCATCCAACATCTCAGGGTGCTCTGCTCTTATCGTGTTTGATGTATATAA TAATAAACTGGTGGGAGGACTGCCATGGCAGTTTGGCTTATTGAACAAACTCCGAGTTTGTTGGTTAGCGTTAAACAATCTTTACGGAAGCATCCCTCCT ACTGTTGGCAACTTGTCTTCTCTTGAAGTATTCGTCGCTGCCAAAAACAAATTTAGCGGGAGAATTCCTGATACTTTAGGCCAATTGAAGCACATCCAGT TTCTGGACGTGGTTGAAAATAATTTATCTGGTAAAATTCCTCCTTCCGTTTTCAATCTTTCTTCTCTCACGGAGATATGGATTGGGTATAACCAATTTCA TGGCAATCTTCCATGGAATATAGGAATATTGCTTCCAAATCTTCTTACCTTTAATGTGCACTATAACCAATTTAGCGGCAGTGTTCCACCTTCTTTGTTC AATGCCTCCAATCTGGTTCAACTGCAACTTCAGAGCAACCATTTTACGGGGGGCATGCCTAGTATGGCAGGCTGTACTAAGCATACACGATGCGCAATCT ACCACAACTCTCTGGGAAGTGGCAAGGTTAACGATTTGAGCTTCCTCTCTTCTTTGACGAATGCCACGGATTTGGAAAGTCTGGAAATCCAGGAAAATAA TTTTGGAGGGAGCTTACCGCACGATATTGGCAACTTGTCAATCAACCTCAAGGATCTAAGATTCAACCGCAACAAAATATCAGGAAACATTCCAGTTGAG GTGCAATACCTTGTCAACTTGGAGCAACTCTGGGCAAGTAACAATAATCTCACAGGTACGATTCCATCTATCATTGGAAACCTCAAGTCTCTGGAGTTGT TGCAATTGTACAACAACAAACTTACAGGGTATATTCCAGCTTCTGTGGGAAATTTGACCAACTTGATTGATCTGGATATTAGCGATAACTATTTACGTGG AGAAATTCCTACTTCTATTCAAAATTGTACAAAATTACTACAATTGAGTCTTCATAGCAACAATCTCAATGGTGTCATCCCCACACAAGTCATGAGTCTG ACCTCATTGTCAATTATCCTAGACTTGTCTCGCAACCAATTCACAGGTGCCCTTCCCTTGGAGGTGGGTAATCTAAAAAACTTGGGTACTTTAAATCTAT CTCATAATATGTTGTCCGGCAGCATCCCAAATAGTTTGGGTAGTTGCATCAGTCTAGAGGCTGTATGCTTGCAAGGCAATCTCCTACAAGGCATAATTCC ATCTTCTTTGAGTTTTCTGAGAGGTATTCAGGAGCTCGATCTTTCTGCAAATAAGTTATCTGGTCAAATTCCAAAATTCTTGGAGATTATGAATATTTCA CGATTTTTGAATCTGTCGCATAACAATTTTGAAGATGAAGTGCCTACTCAAGGAGTCTTCAAAAATAGTAGCATTATTTCAGTCGTTGGAAATAGCAAGC TTTGTGGGGGAATTGCTACACTTAAACTTCCACCATGTAACTTCAGGAGGCACTCAACCAAAACAATTGGTATAGGCAGTTTTGGTTCTGTGTATAAGGG TGTCCTTGATGAGATTCATGAAATGCGTACCAATATTGCTGTGAAAGTATTCGACGTTCAGCGTCGTGGAGCTTCCAAGAGTTTTATGGCAGAATGTGAA GTATTGAAAAATATTAGGGACAAAAATCTTGTGAGAATAATAACAGCATGTTCAAGCATTGATCACGAAAGAAATGATTTCAAGGCACTCATCTATGAGT TTTTTGCTAATGGAAGTTTAGAAGCTTGGCTTCATTGGCCAACGGAAAGAATAAATGAGATTACAACAAAGAGTCTAAACTTCATTCAGAGAATAAATGT TGCCACTGATATAGCTTCTGCAATAGATTATCTTCACAACGGTTGTGAAATTCCAATTGTTCATTGTGATCTCAAGCCAAGCAATGTCCTTCTTGACAAG AACATGGTGGCTCATGTCGGTGATTTTGGATTGGCAAGATTCCTTGCAATAGTTGAGAACCCCTCTTCAACTACCATTGGTATAAAAGGAACCGTTGGTT ACGTACCTCCAGAATATGGAACAGGAAATGAAGTTTCAAAACAAGGTGACGTCTACAGTTATGGTATTTTGCTGCTTGAGTTATTTACTGGAAGGAGACC AACCGATGAAACTTTCAAAGACGGCTTAAACCTTCATAATATCGTCAAACACGCTTTGTCAAAAAAACGCACGTCCAACGTTGTTGATCCAATTTTACTT GATGAACTACTTCATAGCTTTACAACCCTTCACAACGATACTACCAACAACTCAGAGAAAGCAAGCAAAGACATAGAAGAACTAATGAGTTCCATTTTCG AAATCGGCATTGTTTGTTCTTCCGACATCCCAGAAGAGAGAGTCGGTATGAGCCAAGTTGTATCAAAACTTATCGCTATAAAAGAAGGTTGTGCCTGGTC CAAAAGAAGGTAA
AA sequence Show only first row Show all	>Lus10014500 pacid=23170960 polypeptide=Lus10014500 locus=Lus10014500.g ID=Lus10014500.BGIv1.0 annot-version=v1.0 MVGSGSLMSVQYAAVAAALLVHLMCFCCQASSSGIRLRNETDRLALLEFKSMVFPADPSAGSLSSWNDSTHFCEWYGVSCSKRHYGRVTALNLSSLGLYG SISPHVGNLSFLRMLNLYNNSFVGEIPLEIGRLGRLQQLVLYNNSLGGEIPSNISGCSALIVFDVYNNKLVGGLPWQFGLLNKLRVCWLALNNLYGSIPP TVGNLSSLEVFVAAKNKFSGRIPDTLGQLKHIQFLDVVENNLSGKIPPSVFNLSSLTEIWIGYNQFHGNLPWNIGILLPNLLTFNVHYNQFSGSVPPSLF NASNLVQLQLQSNHFTGGMPSMAGCTKHTRCAIYHNSLGSGKVNDLSFLSSLTNATDLESLEIQENNFGGSLPHDIGNLSINLKDLRFNRNKISGNIPVE VQYLVNLEQLWASNNNLTGTIPSIIGNLKSLELLQLYNNKLTGYIPASVGNLTNLIDLDISDNYLRGEIPTSIQNCTKLLQLSLHSNNLNGVIPTQVMSL TSLSIILDLSRNQFTGALPLEVGNLKNLGTLNLSHNMLSGSIPNSLGSCISLEAVCLQGNLLQGIIPSSLSFLRGIQELDLSANKLSGQIPKFLEIMNIS RFLNLSHNNFEDEVPTQGVFKNSSIISVVGNSKLCGGIATLKLPPCNFRRHSTKTIGIGSFGSVYKGVLDEIHEMRTNIAVKVFDVQRRGASKSFMAECE VLKNIRDKNLVRIITACSSIDHERNDFKALIYEFFANGSLEAWLHWPTERINEITTKSLNFIQRINVATDIASAIDYLHNGCEIPIVHCDLKPSNVLLDK NMVAHVGDFGLARFLAIVENPSSTTIGIKGTVGYVPPEYGTGNEVSKQGDVYSYGILLLELFTGRRPTDETFKDGLNLHNIVKHALSKKRTSNVVDPILL DELLHSFTTLHNDTTNNSEKASKDIEELMSSIFEIGIVCSSDIPEERVGMSQVVSKLIAIKEGCAWSKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10014500 [exp]	0	1
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10039607 [exp]	6.2	0.8644
AT3G04350			Plant protein of unknown funct...		Lus10027952 [exp]	7.4	0.8665
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	16.8	0.8246
AT5G20480		EFR	EF-TU receptor (.1)		Lus10022864 [exp]	19.7	0.8156
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	20.4	0.8081
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	22.1	0.8357
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10005217 [exp]	22.1	0.7831
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	23.9	0.8590
AT3G59110			Protein kinase superfamily pro...		Lus10020747 [exp]	35.8	0.8320
AT2G33360			Protein of unknown function (D...		Lus10014479 [exp]	49.1	0.7989

Compare expression of checked genes

Lus10014500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.