Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40030 625 / 0 Protein kinase superfamily protein (.1) AT5G47750 558 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 546 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 531 / 0 D6PK D6 protein kinase (.1) AT3G27580 516 / 3e-179 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT2G44830 520 / 4e-178 Protein kinase superfamily protein (.1) AT3G12690 493 / 3e-170 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G79250 492 / 4e-170 AGC1.7 AGC kinase 1.7 (.1.2) AT1G16440 472 / 8e-163 RSH3 root hair specific 3 (.1) AT3G52890 482 / 4e-161 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032185 [exp] 910 / 0 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10039105 [exp] 564 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 560 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 555 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 543 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10022272 [exp] 535 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10035591 [exp] 493 / 7e-166 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 493 / 2e-165 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10020571 [exp] 469 / 7e-159 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075400 [exp] 672 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 567 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 563 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 556 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.002G137700 [exp] 545 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 539 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 508 / 8e-176 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.010G175900 [exp] 508 / 2e-175 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 500 / 4e-169 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 498 / 4e-167 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014501 pacid=23170889 polypeptide=Lus10014501 locus=Lus10014501.g ID=Lus10014501.BGIv1.0 annot-version=v1.0 ATGAGTGAACAAACGTTAAAGGCCGAGACTTGCGCCGCCGCCGAATCCGCCAGCTTCCGAGATCTCAGCTTGAGCACCACCAACAGTGTCAGTATCAGCT TATGCAGCACCAACAGCAATTTGAGCAATGTCAGCAGCGAGTTCAAGGACAGCAGCGGCAGCCCACTCAGCAGCACCGTCGAATCAATCAACGAGGTCGC CGGTAGTTTCAGGAGCGTCTGCAATTCCAAGCCCCACAGAGGGAATAATGATGTCAGGTGGGATGCGATACAGAGTGTTGTTTTTGTAGATGGCGAGACG ACATTGGGGTTGGGGCATTTCAGGCTGCTGAGGAAGCTCGGGTGTGGAGATATTGGGAGTGTGTACTTGGCTGAATTGAGAGACACCGGATGCCTTTTTG CGATGAAGGTAATGGATAAAGGGATGTTGGCTGGGAGGAAGAAGCTGCTGAGAGCTCAAACTGAGAAGGAGATTTTGGGGTTGCTGGATCATCCCTTTTT GCCTACTCTGTATTCTCATTTTGAGACTGATAAGTTCTCTTGCCTCTTGATGGAGTTCTGCAGTGGTGGAGACCTTCACATGCTCCGCCAGCGCCAGCCT GGCAAGCATTTCACTGAGCACGCTGCAAGGTTCTATGCTTCACAAGTGCTTCTTGCAATGGAGTATCTCCACATGATGGGAGTTGTGTACAGAGATTTAA AGCCAGAAAATGTACTGGTAAGGGAAGACGGCCATATCATGCTCTCCGATTTCGATCTATCATTAAGATGCTGTGTCAACCCAACTCTAGTCCAGTCCAG CGTCGATCCATCATCTCGAATTTCATCCTACTGCATCCAGCCATCCTGCATCGATCCGGCCTGTAGGTTACCCGTCTGTGTCGAACCCTCTTGTTTAGTA CAGCCATCTTGCTTCAAGCCACGCCTCAAAAAGAGCAGCTCTAAAAGTGTGAAGAAGAAGAAAAGTGATAACAAAAAGCTCCATCACTTGTCAAGCTCAT CAGATTCCCTCCCTGTACTTGTTGTCGAGCCAACCACTGCACGGTCCATGTCGTTTGTGGGGACCCACGAGTATTTAGCTCCCGAGATAATAAGAGGGGA CGGACATGGCAGCGCTGTGGACTGGTGGACATTCGGTATCTTCTTGTACGAGTTGTTATTCAGCAAGACGCCATTTAAAGGAAACGGTAATGGTGAAACT CTATGCAATGTGGTTGGCCAACCTCTGAAGTTTCCTGAAGGAACATCTGTCAGTTTCGCAGCTAAGGATCTGATCCGAGGTCTCCTTGTTAAGGATCCTC AGAAGAGATTAGGTTTCAAGAAAGGAGCTACGGAAATTAAGCAGCATCCGTTTTTCGAAACTGTGAATTGGGCTCTGATTCGGAGCACTCAGCCTCCTGA AGTTCCTAAACCAGTAGATATGTCCATTTTGAATCATCCAAGTCCTCCTCCAACCATGCAGCAGCCATCAGTACCAACAAACTTGGGGGGTTGTAATAAT AAGGTTAATAACAACAACAGCAACAACAAGGGAGGTTCTGCTTCTGCTGATTCAGACAGAAGCTCTGGCCCTTACTTGGATTTTGAGTTCTTCTGA
AA sequence Show only first row Show all	>Lus10014501 pacid=23170889 polypeptide=Lus10014501 locus=Lus10014501.g ID=Lus10014501.BGIv1.0 annot-version=v1.0 MSEQTLKAETCAAAESASFRDLSLSTTNSVSISLCSTNSNLSNVSSEFKDSSGSPLSSTVESINEVAGSFRSVCNSKPHRGNNDVRWDAIQSVVFVDGET TLGLGHFRLLRKLGCGDIGSVYLAELRDTGCLFAMKVMDKGMLAGRKKLLRAQTEKEILGLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHMLRQRQP GKHFTEHAARFYASQVLLAMEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCCVNPTLVQSSVDPSSRISSYCIQPSCIDPACRLPVCVEPSCLV QPSCFKPRLKKSSSKSVKKKKSDNKKLHHLSSSSDSLPVLVVEPTTARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFLYELLFSKTPFKGNGNGET LCNVVGQPLKFPEGTSVSFAAKDLIRGLLVKDPQKRLGFKKGATEIKQHPFFETVNWALIRSTQPPEVPKPVDMSILNHPSPPPTMQQPSVPTNLGGCNN KVNNNNSNNKGGSASADSDRSSGPYLDFEFF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	0	1
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	1.0	0.9828
AT3G29300			unknown protein		Lus10034904 [exp]	2.0	0.9743
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	3.9	0.9718
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	4.6	0.9701
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	4.9	0.9681
AT1G61170			unknown protein		Lus10011222 [exp]	5.0	0.9606
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	5.8	0.9644
					Lus10015654 [exp]	6.3	0.9770
					Lus10007549 [exp]	9.5	0.9754
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	13.4	0.9709

Compare expression of checked genes

Lus10014501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.