Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) AT3G28490 352 / 3e-122 Oxoglutarate/iron-dependent oxygenase (.1) AT5G18900 331 / 4e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G06300 322 / 2e-110 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT2G17720 245 / 2e-80 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G20270 243 / 8e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 243 / 2e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 234 / 3e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25600 202 / 8e-64 Oxoglutarate/iron-dependent oxygenase (.1) AT2G43080 187 / 9e-58 AT-P4H-1 P4H isoform 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032183 [exp] 520 / 0 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10012014 [exp] 334 / 4e-115 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 328 / 6e-113 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032184 [exp] 238 / 7e-80 AT3G28480 206 / 2e-67 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10028404 [exp] 235 / 2e-76 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 235 / 2e-76 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005620 [exp] 218 / 2e-69 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017249 [exp] 204 / 2e-63 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038855 [exp] 195 / 6e-60 AT4G25600 250 / 2e-81 Oxoglutarate/iron-dependent oxygenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075100 [exp] 412 / 8e-146 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.008G197700 [exp] 331 / 4e-114 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075300 [exp] 320 / 2e-110 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.005G108000 [exp] 241 / 9e-79 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G245300 [exp] 237 / 3e-77 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G142800 [exp] 231 / 1e-74 AT4G25600 278 / 4e-93 Oxoglutarate/iron-dependent oxygenase (.1) Potri.007G060800 [exp] 228 / 2e-73 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G232100 [exp] 192 / 9e-60 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.001G296800 [exp] 170 / 3e-51 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G052600 [exp] 170 / 6e-51 AT4G33910 353 / 4e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0213 [flax] [poplar] ShK-like PF01549 [flax] [poplar] ShK ShK domain-like CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10014502 pacid=23170918 polypeptide=Lus10014502 locus=Lus10014502.g ID=Lus10014502.BGIv1.0 annot-version=v1.0 ATGGAGTTCCGGTCCGGCCATAATTTCCTAGGGATTTCTCTCTGTTTCATCTTGATTTTGCCTCGCCTCGCCTTCTCAGACGAAATAGAGGGCTCAGTGC TGAGGTTGAAATCCTCTGATCCCACCCGCGTCACTCAACTCTCCTGGCATCCAAGGGCCTTTCTGTACAAAGGATTTCTGTCAGACGCGGACTGCGAGCA CCTTAAGGACCTGGCCAGGGACTCGCTTGAGAAATCAATGGTGGCGGATGATGAAACAGGGAAGACTATAGAGAGTGAAGAAAGAACAAGCTCTGGAACT TTTCTTCGTAAAGCACAGGATGAAGTGGTAGCTTCCATTGAACATAGGATTGCTACCTGGACTTTCCTTCCTGTCGAAAATGGAGAGGCGATTCAAATCC TACGCTACGAGATTGGTCAGAAGTACGAGCCACATTTTGACTATTTCAATGACGAGGTTAATCAACAGCTTGGCGGACACCGGATTGCCACTGTGTTGAT GTATCTATCAGATGTAGCCAAGGGTGGGGAGACCGGGAAGGATTCTCTAGCGAAGCCCCATGACTGGTCTGATTGTGCAAAAGATGGTTATACAGTGAAG CCTGAGAAGGGTGATGCTCTACTGTTCTTCAATCTCCACCCTGATGCAACCACTGATCTGACCAGTCTGCACGGGAGTTGCCCCGTTATAGAGGGGGAGA AGTGGTCAGCAACAAAGTGGATCCACGTCAGGTCATTCGATGAATCCATATCGCAACAGCAAGAAGGAGGTTGCAACGACGAGAGCGAGAACTGCGAGAA ATGGGCCAACGAAGGTGAGTGCGAGAAGAACCCGCAGTATATGGTTGGTACTGATAAATTCTTGGGAAACTGTAGGAAGAGTTGCAGGGTATGCTCATCT TAG
AA sequence Show only first row Show all	>Lus10014502 pacid=23170918 polypeptide=Lus10014502 locus=Lus10014502.g ID=Lus10014502.BGIv1.0 annot-version=v1.0 MEFRSGHNFLGISLCFILILPRLAFSDEIEGSVLRLKSSDPTRVTQLSWHPRAFLYKGFLSDADCEHLKDLARDSLEKSMVADDETGKTIESEERTSSGT FLRKAQDEVVASIEHRIATWTFLPVENGEAIQILRYEIGQKYEPHFDYFNDEVNQQLGGHRIATVLMYLSDVAKGGETGKDSLAKPHDWSDCAKDGYTVK PEKGDALLFFNLHPDATTDLTSLHGSCPVIEGEKWSATKWIHVRSFDESISQQQEGGCNDESENCEKWANEGECEKNPQYMVGTDKFLGNCRKSCRVCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	0	1
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	2.4	0.8954
AT4G35980			unknown protein		Lus10042598 [exp]	6.0	0.8150
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	6.2	0.8454
					Lus10033476 [exp]	6.3	0.8542
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	8.7	0.8450
AT1G69020			Prolyl oligopeptidase family p...		Lus10032378 [exp]	10.5	0.8099
					Lus10035529 [exp]	11.6	0.8140
AT3G55240			Plant protein 1589 of unknown ...		Lus10003293 [exp]	11.8	0.8099
AT3G27050			unknown protein		Lus10032042 [exp]	11.8	0.8146
AT2G14045			unknown protein		Lus10022007 [exp]	13.0	0.7758

Compare expression of checked genes

Lus10014502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.