Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28370 149 / 6e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032182 [exp] 317 / 5e-110 AT3G28370 156 / 3e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350100 [exp] 205 / 4e-66 AT3G28370 202 / 4e-64 unknown protein Potri.017G074100 [exp] 155 / 8e-47 AT3G28370 208 / 5e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014503 pacid=23170872 polypeptide=Lus10014503 locus=Lus10014503.g ID=Lus10014503.BGIv1.0 annot-version=v1.0 ATGGCGGGAACTGAGCAGAAGCAACTTCTTGCGCTCATTCGCGACTTCGCCTCTGAGAAATCGCATGGAGAGAGAAGAGTTTCTGGCTTGAAGAAGCGAA TTCAAGAGCTCCAGTATGAGATCAATAATGAGAATGCGGAGCTGGACAGGACTAAGCAGTCGAAGGAGACGGCTGAAAATAAGCTCAAAGGCTATGAAGT TGAATTAGCTATGCTTGACGGATCCTTTCAAACGCTAGAGTCGAGAAATTGTCTGACTCAAACTGAGATCTCCAGAGTTAGCCCTGAAGTGGAGAAGCTT AAGATAAGTATGCATTATATTCATGCTTCGTGTAGGAAATTCCATCAGGCCGTATCAAGCAACTTTCCTAAACAAATTAGCGGAAACACTGCTGCAGAAA ACAAACGTGATATGTTTGCACAAATCAATTCTGAGATACGAAAGGAGGGACAAGCGCATATAGCTGAGAAGAATGTTCGAAAGCAACTCAAGCAGGAGTA TGGTGACCTTCAGAAGAAGGTTTCTTTGATGGAAATGATAATGAAAGAGAGGGAAGCTTTGCAGGATATGGGAAGATATCCTTTGACTTCTGAACTGGAA CAAACATGCGCTGTCCTTGGCGAGGAGCTGCAGAAGAGATGTGCATGTCCGAACTGTCACAAGGAGAACACAGAGGAGCTCAGTGGCATTCTCATGGAAA ATTAA
AA sequence Show only first row Show all	>Lus10014503 pacid=23170872 polypeptide=Lus10014503 locus=Lus10014503.g ID=Lus10014503.BGIv1.0 annot-version=v1.0 MAGTEQKQLLALIRDFASEKSHGERRVSGLKKRIQELQYEINNENAELDRTKQSKETAENKLKGYEVELAMLDGSFQTLESRNCLTQTEISRVSPEVEKL KISMHYIHASCRKFHQAVSSNFPKQISGNTAAENKRDMFAQINSEIRKEGQAHIAEKNVRKQLKQEYGDLQKKVSLMEMIMKEREALQDMGRYPLTSELE QTCAVLGEELQKRCACPNCHKENTEELSGILMEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28370			unknown protein		Lus10014503 [exp]	0	1
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10015139 [exp]	1.0	0.9364
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	12.0	0.9166
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10039173 [exp]	15.3	0.7844
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	16.2	0.9156
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	17.7	0.9090
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	20.6	0.9039
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	21.8	0.9096
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	22.3	0.9079
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	26.5	0.9065
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009960 [exp]	27.9	0.8973

Compare expression of checked genes

Lus10014503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.