Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15020 892 / 0 SNL2 SIN3-like 2 (.1.2) AT3G01320 890 / 0 SNL1 SIN3-like 1 (.1.2) AT1G70060 764 / 0 SNL4 SIN3-like 4 (.1) AT1G24190 759 / 0 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT1G59890 405 / 1e-125 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 381 / 5e-117 SNL6 SIN3-like 6 (.1) AT1G24200 183 / 3e-53 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 169 / 8e-49 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G35610 113 / 6e-29 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G24230 115 / 1e-28 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032181 [exp] 1454 / 0 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10013293 [exp] 769 / 0 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 769 / 0 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10010729 [exp] 735 / 0 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10029217 [exp] 425 / 6e-135 AT1G70060 912 / 0.0 SIN3-like 4 (.1) Lus10029218 [exp] 220 / 2e-64 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10030816 [exp] 129 / 4e-34 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10030814 [exp] 124 / 1e-32 AT1G70060 130 / 2e-35 SIN3-like 4 (.1) Lus10034645 [exp] 96 / 1e-22 AT1G24190 107 / 1e-27 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350200 [exp] 1011 / 0 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.008G192200 [exp] 793 / 0 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 792 / 0 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G316300 [exp] 92 / 4e-21 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2) Potri.005G008200 [exp] 70 / 2e-14 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2) Potri.017G056201 [exp] 0 / 1 AT1G24190 0 / 1 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat PF08295 [flax] [poplar] Sin3_corepress Sin3 family co-repressor
Representative CDS sequence Show only first row Show all	>Lus10014504 pacid=23170972 polypeptide=Lus10014504 locus=Lus10014504.g ID=Lus10014504.BGIv1.0 annot-version=v1.0 ATGAAGAGAGTAAGGGAGGAGTTCTACGGTGGCAGCGGCGGCTCCCAATTCAAACGAACTCTAGGCTCCTCCTCATATGCGCAACCCCCAATTCGAGGAG TTGGAGGTGGAGGCGGATTAGGAGGGCCTGCAGTTGGAGGAGTAGGGTCTGCTGGAGGAGGTGGTGGTGGGATGGCGGGAGCAGTTGTTGGTGCAGCCGG AAGTGGAGTTGCCACTGCACCTAGCGGTGGAACCTCTCATAAGCTTACAACAAGTGATGCCTTGGCCTACCTTAAGGAAGTGAAAGATAAGTTTCAGGAC CAGAAAGAAAAATATGATACGTTCCTTGAGGTCATGAAAGATTTTAAGGCTCAGAGAACTGACACTGCTGGTGTTATTGCACGGGTGAAAGAGTTGTTCA AAGGACATAACAGTCTAATTTATGGTTTTAATACCTTCATTCCAAAAGGTTATGAAATAGTCCTGGATGAAGACGAGGCTCCCCCAAAGAAGACAGTTGA ATTCGAAGAAGCTATGAGCTTTGTCAATAAAATCAAGAAACGGTTCCAAAATGATGAACATGTTTATAAGTCCTTCCTAGATACGCTCAAGCTTTATCGG AAGGAGCACAAGGACATAAATGAGGTCTACAAAGAGGTTGCAGTTCTGTTCAAGGACCATCCAGATCTGCTTGATGAGTTCACTAGGTTCTTACCCGATA CTTCAGGAACTGCTGCGTCCCAGCATGCTGCTAATGGTCCAGACACTAACCAGCGGTCTGCACAGCATACCCCTACTACATCCACTTTGCGTCCAATACA CATAGATAAGCAACATCGGCGGGACAACGTTGCTACTTCTCACATTGAAAGAAATCGCAGTGTGGAGCAGCCTGGAATGGATGAGGAAAAACTGATGTTA CAAACACAAAAGGAACAAAAGAAGCGAGCTGAGAAAGATAGCAGAGACAAGCAAAGCCATGATCAAGCTGAGAGGGAACTTGATAATGACAGCAACAGGC GGAAGCCTTCCCGGAAAGTTGAGGGTTCTGGAATCAGTTCTAACGCAGCTTCTCATGATGAGAAGGATGGCTTAAAGAGCATGTATCACGAGGGGTTTGT TTTCTGTGAGAAAGTCAAGGAGAAGTTGGGCACCTCTGACTACCAGGCATTCTTGAAGTGCCTCAATATATTCAATAATGGAATAATTAAGAAGAATGAT TTACAAAATCTGATTACTGACTTGCTTGGAGGATACCCCGACCTCATGGAAGAATTCAATGATTTCCTACAGCGCTGTGAGAATATTGATGGGTTCCTTG CTGGTGTTATGAGTAAAAAATCTATGGTTGGTGGTGGACTTACAGCAAGATCATTAAAAGTGGAGGAACGCGACAATGAACCAAAGCATGAACTTGATGC AGCTAAAGACCAGGAGAAATGCAATGAGAAGTATTTGGACAAATCTATTCAAGACCTTGACCTTTCTAACTGTCAACGTTGTACCCCCAGCTATCGGCTT CTTCCAGATGATTATCCAATACCTTTAGCAAGCCAGAAATCAGATCTTGGTTCTCAAGTGCTCAATGACCACTGGGTCTCCGTAACTTCAGGAAGTGAAG ATTACTCTTTTAAGCATATGCGTCGGAACCAGTATGAAGAAAGCTTATTCAGATGTGAAGATGATCGGTTTGAGCTGGATATGCTGTTAGAAGCTGTTAG CTCAACGGCTAAGTGCGTGGAGGAGTTGGTGAATAACTTCAATGAAAATAAAATCGAGTCGCCAATTCAAATTGACGCACTTCTTACTGCACTGAATTTG AGGTGCATTGAGCGTTTATATGGAGACCATGGTCTAGATGTGCTGGATATATTGCGCAAAAATCCTGCTATTGCATTACCTGTCATACTAACTCGGTTGA AGCAAAAACAAGAAGAGTGGACTCATTGTCGCACAGATTTCAACAAGGTTTGGGCTGAAATATACACAAAAAATCACTACAAATCACTGGATCACCGTAG CTTCTATTTCAAACAACAGGATTCAAAGAATTTGAGCTCGAGATCTTTGATTGCTGAGATTAAGGAATTGAAAGACAAGCAACCAAAGGAGGATGATGTT CTTCTTGCCTTTGCCGCTGGAAGAAGACAATCCATAGCTTCAAACTTGGAATACGAGTATTCTGATGTCAACATTCATGAAGACTTGCGTAAAATTGTAC AGTATTCTTGTGAAGAAGTTTGCTCGACAAAGGAACAACTTAATAGAGTTATGCGGCTTTGGACTACATTTGTAGAGCTAATGCTGGGTATTGTTCATTC AAATTCCAAAGAATATCCTGGAGGTTGCGGAAAAGATGAGCAGCTTCTTTCAAATTGCACAACCACAACTGTGACAGAAAATGACCCAGAAAGTAGAGAA AGAGCAGAAAAATTTAGACTTGAGTGA
AA sequence Show only first row Show all	>Lus10014504 pacid=23170972 polypeptide=Lus10014504 locus=Lus10014504.g ID=Lus10014504.BGIv1.0 annot-version=v1.0 MKRVREEFYGGSGGSQFKRTLGSSSYAQPPIRGVGGGGGLGGPAVGGVGSAGGGGGGMAGAVVGAAGSGVATAPSGGTSHKLTTSDALAYLKEVKDKFQD QKEKYDTFLEVMKDFKAQRTDTAGVIARVKELFKGHNSLIYGFNTFIPKGYEIVLDEDEAPPKKTVEFEEAMSFVNKIKKRFQNDEHVYKSFLDTLKLYR KEHKDINEVYKEVAVLFKDHPDLLDEFTRFLPDTSGTAASQHAANGPDTNQRSAQHTPTTSTLRPIHIDKQHRRDNVATSHIERNRSVEQPGMDEEKLML QTQKEQKKRAEKDSRDKQSHDQAERELDNDSNRRKPSRKVEGSGISSNAASHDEKDGLKSMYHEGFVFCEKVKEKLGTSDYQAFLKCLNIFNNGIIKKND LQNLITDLLGGYPDLMEEFNDFLQRCENIDGFLAGVMSKKSMVGGGLTARSLKVEERDNEPKHELDAAKDQEKCNEKYLDKSIQDLDLSNCQRCTPSYRL LPDDYPIPLASQKSDLGSQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLEAVSSTAKCVEELVNNFNENKIESPIQIDALLTALNL RCIERLYGDHGLDVLDILRKNPAIALPVILTRLKQKQEEWTHCRTDFNKVWAEIYTKNHYKSLDHRSFYFKQQDSKNLSSRSLIAEIKELKDKQPKEDDV LLAFAAGRRQSIASNLEYEYSDVNIHEDLRKIVQYSCEEVCSTKEQLNRVMRLWTTFVELMLGIVHSNSKEYPGGCGKDEQLLSNCTTTTVTENDPESRE RAEKFRLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	0	1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	2.8	0.9327
AT2G25730			unknown protein		Lus10007687 [exp]	3.7	0.9243
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	4.2	0.9219
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000873 [exp]	5.3	0.9119
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	5.9	0.9175
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	6.0	0.9213
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	8.1	0.9132
AT3G06670			binding (.1.2)		Lus10037742 [exp]	9.2	0.8878
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10019489 [exp]	9.2	0.8908
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	9.7	0.8798

Compare expression of checked genes

Lus10014504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.