Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15020 365 / 2e-113 SNL2 SIN3-like 2 (.1.2) AT3G01320 342 / 6e-105 SNL1 SIN3-like 1 (.1.2) AT1G24190 301 / 2e-90 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT1G70060 290 / 3e-86 SNL4 SIN3-like 4 (.1) AT1G59890 263 / 3e-77 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 251 / 4e-73 SNL6 SIN3-like 6 (.1) AT1G10250 99 / 4e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032181 [exp] 779 / 0 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10013293 [exp] 321 / 3e-97 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 309 / 2e-92 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10029217 [exp] 277 / 6e-83 AT1G70060 912 / 0.0 SIN3-like 4 (.1) Lus10010729 [exp] 222 / 1e-62 AT1G70060 1191 / 0.0 SIN3-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350200 [exp] 358 / 1e-110 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.008G192200 [exp] 335 / 4e-102 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 332 / 4e-101 AT1G70060 1396 / 0.0 SIN3-like 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014505 pacid=23170946 polypeptide=Lus10014505 locus=Lus10014505.g ID=Lus10014505.BGIv1.0 annot-version=v1.0 ATGTCTGTACTTGACATACAGAGCACCTGTCGCGTCGGAGTTACTGATACCAGGGTATCACTTAAGATTGGATCAGAACAGAGTCATGTTAAAAGCAACA ATGATGGAGCACCAGGTCACGGTAGTGGTTCTGTGATGGCCGTGTCCAGTACGGTTGCTAACATAGAATACAAAGCCGGTGCTGATGCTGGGCCGTCTGA AGAGAGAGCCGTTGCTTTAAGAATCGTTACGTTTATTATTGCCCTCCAGGTTGGGACCGCAAGCGGCGGGTCATTTAACGATGACAAGAAAGTTAATCAG AACCAGGTCAAATCCACTTCTCCTTCTAAAATTGAGAAGGAAGAGGGAGAGTTATCACCTAATGGTGAATTTGAAGACAACTTTGTTGCCTATGTACCAA AGAGTAAGGACAGTGCTGATGCCATGGCAGAAGTATCTGAAAATGCAGAAGAATTGCATTGTCCAGATGGAGAAGGAGAAATTGATGGTGATACGGATGC AGATGATGAGGACAGTGAAAATGCTTCCGAAGCTGCAGATGATGCATCGAGCAGTGAATCTGCAGGGGACGAGTGTTCCAGGGAAGAGCATGACGAGGAT GAAGATCTGGAGCATGATGAAGTCGATGGCAAGATTGAGAGTGAAGGGGGAGGAGGGGGGAGGAGCAGAGGGTATGACCACCAATCAAAATTGCTGGACA TGGAAAGGAAAGATTCGCGGATTTTCTACGGGAATGATGATTTTTATCTGCTTTTCAGGCTTCATCAAATCCTTTATGAGAGAATCTTATCGGCGAAAAT GAATTCCACCAGCAATGACATGAAATGGAGAAGTTCCAAGAATGATACTGCTGTGGATCCATATGCCAGGTTTATAACGGCTTTGTACAACCTGCTTGAT GGATCTGCCGACAATGCGAAATTTGAAGATGAATGCAGAGCCATTTTCGGAAACCAATCATATCAGTTATTTACTCTCGACAAGTTGATATACAAAATCG TCAAGCAGCTTCAGGTGGTTGCTGCCGATGAGATGGACAATAAGCTTCTTCAATTATACGAGTACGAGAGCTCGAGAAAAACTCGGAAGTCCATCGACTC TGTTTATTATGCTAATGTGCGATATTTCCTGCACGAGGAGAATGTATATCGTTTAGCGTTCACATCTTCTCCGTTTCTAATGTCGATCCAGCTTATGGAC AATGTTATCGAGAAGCCGGATATACTGCCGGTCTCCATGGATCCTAATTTCGCAGCATATCTGCAGAAGGATTATCTGTCTGTTTCTCAAGGCAAAAGGG AGCCGCAGGGCGTTATACTTCATAGAAACAAACACAAGTATGATAAGATGGACGCTCTTTCTGCGTATTGTGATGCAATGGAAGGTGTCAGCATGGTCAA CGGTTTGGAGTGCAAAGTTGCTAGCAATTACTACAAGATCCACTACGTTCTGGACACGGAAGATTTTTTCTACCGGTCTACTAGACGAAGGAAAACCTCA AGTGGTGGTCGATCTTCACATCGTCGTGATCGGTTTCACAGACTCTTGCAGTCTTCTACGTAA
AA sequence Show only first row Show all	>Lus10014505 pacid=23170946 polypeptide=Lus10014505 locus=Lus10014505.g ID=Lus10014505.BGIv1.0 annot-version=v1.0 MSVLDIQSTCRVGVTDTRVSLKIGSEQSHVKSNNDGAPGHGSGSVMAVSSTVANIEYKAGADAGPSEERAVALRIVTFIIALQVGTASGGSFNDDKKVNQ NQVKSTSPSKIEKEEGELSPNGEFEDNFVAYVPKSKDSADAMAEVSENAEELHCPDGEGEIDGDTDADDEDSENASEAADDASSSESAGDECSREEHDED EDLEHDEVDGKIESEGGGGGRSRGYDHQSKLLDMERKDSRIFYGNDDFYLLFRLHQILYERILSAKMNSTSNDMKWRSSKNDTAVDPYARFITALYNLLD GSADNAKFEDECRAIFGNQSYQLFTLDKLIYKIVKQLQVVAADEMDNKLLQLYEYESSRKTRKSIDSVYYANVRYFLHEENVYRLAFTSSPFLMSIQLMD NVIEKPDILPVSMDPNFAAYLQKDYLSVSQGKREPQGVILHRNKHKYDKMDALSAYCDAMEGVSMVNGLECKVASNYYKIHYVLDTEDFFYRSTRRRKTS SGGRSSHRRDRFHRLLQSST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	0	1
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	1.4	0.9322
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	2.0	0.9255
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	4.5	0.9123
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	5.0	0.9102
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	6.2	0.9015
AT1G59453			B-block binding subunit of TFI...		Lus10000370 [exp]	7.9	0.8768
AT1G53200			unknown protein		Lus10030239 [exp]	8.2	0.8891
AT1G23230			unknown protein		Lus10035997 [exp]	9.0	0.8933
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030878 [exp]	9.8	0.8895
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	9.9	0.9022

Compare expression of checked genes

Lus10014505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.