Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14970 310 / 2e-103 unknown protein AT2G14910 151 / 5e-42 unknown protein AT1G63610 63 / 8e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032180 [exp] 610 / 0 AT5G14970 327 / 4e-111 unknown protein Lus10026601 [exp] 159 / 2e-44 AT2G14910 396 / 9e-137 unknown protein Lus10013888 [exp] 141 / 2e-37 AT2G14910 380 / 8e-130 unknown protein Lus10030753 [exp] 63 / 1e-10 AT1G63610 397 / 6e-139 unknown protein Lus10013233 [exp] 62 / 2e-10 AT1G63610 389 / 1e-135 unknown protein Lus10016008 [exp] 55 / 4e-08 AT1G63610 409 / 1e-143 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298200 [exp] 153 / 1e-42 AT2G14910 419 / 1e-145 unknown protein Potri.009G092800 [exp] 152 / 3e-42 AT2G14910 421 / 9e-147 unknown protein Potri.005G250000 [exp] 61 / 3e-10 AT1G63610 441 / 7e-156 unknown protein Potri.002G011000 [exp] 58 / 4e-09 AT1G63610 431 / 3e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014506 pacid=23170861 polypeptide=Lus10014506 locus=Lus10014506.g ID=Lus10014506.BGIv1.0 annot-version=v1.0 ATGGCGGCCACCACTGCTCGAGCTTTCCTCCTCTCTCGCCGCGTCACTGACCTCTCACCCAAACACCACCAACCACCACAACCTCATCCTTCGTCAACGG CCTCCTCTTCCGTCTTCCCTCGCTACGGCTTCCTCCCGCAGCGCCAGAATTCTCCTCACGCCGCCTTCGCCGTGACGACGGTCAGCTGTCTGAGCAGCGG CGGAGGGATCTCCGATGACTTCGTTGTCTCCACTCGGAAGTCTAGCTTGGACCGCGGGTTCTCCGTCATCGCCAACATGCTCCGGAAGATCGAGCCCCTT GATAACTCGGTCATTTCCAAGGGAGTTTCTGATTCCGCCAAGGATTCGATGAAGCAGACGATCTCGACGATGCTTGGCCTTCTGCCGTCTGATGATTTCT CCGTCGTGATTCGTTTTGGGAAGCATCCTCTCGATAGCCTCCTGATTTCCTCCATCATTACGGGATACACGCTGTGGAATGCGGAGTACAGGATGGCTTT GACGCGGAACTTGAATATTTCTATGGAGAATTGGAGAAAGTTTGATTCTCAAGAACAGGAAGAAGACACAGAGGAGGAAAGATATGTGAATGAGGGCCGA GGTGGTGAAGCTGGTCTTCAGGATGTCGAAATCAGTCCACAGGTGTTTGGGGATTTGCCACCGGAGGCCTTGAACTACATTCAACACTTGCAATCTGAGT TATCTAACGTTAAAGAGGAACTGAAGTCGTGGGAACAGCACATTACAGAAATGGGAAACGGCAAAGGAAATAAGAATGATTTATTAGAGTACCTGCGGTC ACTTGATCCCCACATGGTAAAGGAGTTATCTCAACCATCTTCAAACGAGGTGGAGGACATCATTCACCAGCTTGTCCAAAACACAGTGCAAAAATTCTTG AAAGATGAATCAGCCTTGAGTTTCAATGGAGACCCGATCATCTCAAAAACAGCAAATAGTAAAAAAACTAGCGCCGATGAACACAACACCACCATCGGCA CTTCTCGTGATTACCTAGCAAAGCTTCTCTTCTGGTTGGTGTATGCTGCTGGGGCATCATTTGAGAGGCTTGGAGAACAGATTGCAGTTAAGTTGTGTTG TAGGATTGTTGTAACAGACCTTGCAGCTGCAATGTCGATCGATAAAGCTGGCAATAGCAGAACTGCAGTGGGTGGCACTGTGTAG
AA sequence Show only first row Show all	>Lus10014506 pacid=23170861 polypeptide=Lus10014506 locus=Lus10014506.g ID=Lus10014506.BGIv1.0 annot-version=v1.0 MAATTARAFLLSRRVTDLSPKHHQPPQPHPSSTASSSVFPRYGFLPQRQNSPHAAFAVTTVSCLSSGGGISDDFVVSTRKSSLDRGFSVIANMLRKIEPL DNSVISKGVSDSAKDSMKQTISTMLGLLPSDDFSVVIRFGKHPLDSLLISSIITGYTLWNAEYRMALTRNLNISMENWRKFDSQEQEEDTEEERYVNEGR GGEAGLQDVEISPQVFGDLPPEALNYIQHLQSELSNVKEELKSWEQHITEMGNGKGNKNDLLEYLRSLDPHMVKELSQPSSNEVEDIIHQLVQNTVQKFL KDESALSFNGDPIISKTANSKKTSADEHNTTIGTSRDYLAKLLFWLVYAAGASFERLGEQIAVKLCCRIVVTDLAAAMSIDKAGNSRTAVGGTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14970			unknown protein		Lus10014506 [exp]	0	1
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10013645 [exp]	1.0	0.8125
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	1.4	0.8085
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	2.4	0.7780
AT5G24690			Protein of unknown function (D...		Lus10022966 [exp]	3.5	0.7279
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10038279 [exp]	7.1	0.7284
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	8.7	0.6980
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	10.6	0.7057
AT2G31890		ATRAP	RAP (.1)		Lus10006143 [exp]	11.2	0.6759
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10015532 [exp]	13.5	0.7274
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	18.2	0.6741

Compare expression of checked genes

Lus10014506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.