Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14950 1476 / 0 GMII, ATGMII golgi alpha-mannosidase II (.1) AT3G26720 265 / 9e-74 Glycosyl hydrolase family 38 protein (.1.2) AT5G13980 262 / 5e-73 Glycosyl hydrolase family 38 protein (.1.2.3) AT5G66150 261 / 4e-72 Glycosyl hydrolase family 38 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015337 [exp] 1759 / 0 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1) Lus10032179 [exp] 1673 / 0 AT5G14950 1265 / 0.0 golgi alpha-mannosidase II (.1) Lus10039457 [exp] 1654 / 0 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10035111 [exp] 252 / 6e-69 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 248 / 5e-68 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10012577 [exp] 225 / 5e-60 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 221 / 4e-59 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10041516 [exp] 196 / 7e-51 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10014259 [exp] 130 / 1e-30 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350400 [exp] 1584 / 0 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 1571 / 0 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 390 / 2e-126 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.007G056300 [exp] 280 / 2e-78 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.014G143600 [exp] 260 / 9e-72 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.012G106500 [exp] 260 / 9e-72 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 247 / 1e-67 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [flax] [poplar] GH57_38_middle PF09261 [flax] [poplar] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10014507 pacid=23170961 polypeptide=Lus10014507 locus=Lus10014507.g ID=Lus10014507.BGIv1.0 annot-version=v1.0 ATGCCGTTATCATCTTACACCGGTTCCCGCCGGGGAGGAGGAGGAGCTAGCGGCAGCGTCTGGTCGCAGTCGATTCTCCCGACCTCATCTTCCAGCAAGT CGAAGCTTCCCTCAAGAAAACCTAGGAAACGAGGCGCTTTAATCAGTTTCCTCTTCGCCAACTTCTTCGTCATCTCGCTCTCGATCTCCCTCCTCTTCCT CTTCGTCACCATCCTCCATTTCGGCTTCCCCAACCCGTTCTTCTTCTCCTCTTCGACGTTCAATTCCGGGCATTCGCCACCGGTCCCCTTCAGCAGGAGG AGGAACCACCCGACCGAGAATGACGTTACGAAAGGGGCTACTGTGGATTTAACTACCAAGGATTTGTACGATAAGATCGATTTCTTGGATGAGGATGGCG GGACGTGGAAGCAAGGGTGGAAGGTGAGCTACAGGGGAGATGAATGGGATAATGAGAAATTGAAGGTTTTCGTGGTGCCTCATTCCCATAATGATCCTGG TTGGAAGCTCACCGTGGATGAGTATTACGAGAAGCAGTCGAGGCTTATACTTGATACGATTGTGGAAACGCTTTCTAAGTTTGAAAGCGTAATGAGAGCT TGGTTCTTGTTGGCTTTCATTCTGTGTGGTGTTAGTTTAAAGCGAAAACCAGGTGGCTTCAAAGGGAACTTCTGCACAGATGCTCGGAGGAAGTTCATAT GGGAAGAGATATCTTATCTGGAGAAATGGTGGAGAGATGCATCCGAGGAGAACAGAGCATCTTTTACCAAACTGGTTAAAAATGGCCAATTAGAAGTTGT TGGTGGTGGTTGGGTGATGAATGACGAGGCGAATTCCCATTTCTTCTCAATAATTGAGCAGATTACTGAAGGAAACATGTGGCTGAATGACACCATTGGT GTTATTCCGAAGAATTCTTGGGCAATAGATCCCTTTGGTTATTCATCTACGATGGCATATCTTCTTCGCCGTATGGGGTTTGAGAATATGCTAATTCAGA GGACTCATTATGAGCTTAAGAAGGAACTTGCTTTGCATAAAAAGCTTGAGTTTGTATGGCGACAGAGCTGGGATGCACGTGAAACAACTGATATTTTTGT GCATATGATGCCTTTCTATTCTTATGATGTTCCCCATACTTGTGGGCCAGAACCTGCCATTTGTTGCCAGTTTGATTTTGCTCGAGTGCCTGGATTTTTC TATGAGCTATGCCCTTGGCGCCAGAACCCAGAAGATATTACTCCAGAAAATGTGAACGAGAGGACTCAACTCTTGCTAGATCAATACAGGAAGAAGTCAA TCTTATACCGTACAAATACTCTGCTTATTCCTCTTGGGGATGATTTCAGATATGTCAGTGTTGATGAAGCAGAGGCCCAATTTCATAATTACCAATTGTT GTTCGACCATATCAATTCGAACCCTAGCCTAAATGCCGAAGCCAAGTTCGGCACTCTGGATGATTATTTTCAAGCTCTACGTGAGGAGTCTGCTAGAATA AACTACTCACTTCCTGGGGAAGTTGGATCTAGTCAGATAGGAGGATTTCCTTCTCTATCAGGGGACTTCTTTACTTATGCTGATAGGGAAAAGGACTATT GGAGTGGCTACTATGTTTCTGTCGGCCATTGCCAAAGAAACCAGTGTGAGAAGCTCGTCACAGGATTCAGCTATAAGTTGACAGCTGCAAGGAGGAATTT AGCACTCTTTCAGCATCATGATGGGGTAACTGGCACAGCTAAGGATCATGTTGTTCAGGACTATGGAATTCGGATGCATACCTCTTTGGAAGACCTCCAG ATTTTCATGTCTAAAGCTATTGAAGTACTTCTCGGCATGCACTTAGAGAAGCTCGATTTGAACCCTGCTAAGTTCGAGGCAGACCAAGGGTGGGCTGAAA ACAACAGACAACCGGCTCACAAGGCTTTGAGTCCTCGCGAAGGAACTGCACAATCAGTGGTTCTCTTTAACCTTACAGAGCAGACTAGAGAAGAGATCGT AATGGTTGTTGTTAATAGACCATATGTAACTGTCTTGGACTCAAACTGGACTTGCGTTCAAAGCCAAGTTTCTCCCGAGCTGAAGCATGATAGTAGCAAT GTCTTTAGTGGTCGGCACCGGGTCCACTGGAAAGCTTCGGTTCCACCAATGGGACTGGAAACTTACTACATTTCCAATGGCTTTGTAGGATGTGAAACGG CCAAACCTGCCAAACTAAAGTACTTCTCTTCAACTTCATTCTCTTGCCCTAAACCGTATGCATGTTCTAAGTTGGAAGGTGATTCGGCAGAAATCCACAA CCAGCAGCAGATTCTCAGCTTTGACCTTAAGGAAGGTTTATTGCAGAAAATTAGACACAGCAATGGCTCCACCTATGTTGTGGCAGAAGAAATCGGTATG TATGCCAGTAACGGTAGTGGTGCATACTTGTTTAGACCACTTGGAGATGCTCAATCGATCATTCAAACCAATGGGCTTACTGTTATCACCGAAGGTCCGC TAATGGAAGAGCTCTTCTCATATCCGAAGACACCATACAAGAAAAATCCCGTCTCCCATAGTACTCGCCTTTACAACGGAGCTAACACTATACAAGAGTT AGTTGTCGAGACGGAATATCATGTCGAGCTTATTGGCAAAGAATTCGACGACTGTGAATTGATAGTTCGATACAAGACAGATATTGATAGCAGGAGGATA TTCTATACTGATCTGAACGGCTTTCAGATTAGCCGCAGAGAAACGTATGATAAGATTCCATTACAAGGAAACTACTATCCCATGCCTTCACTGGCTTTTC TACAAGGATCCAACGGTCAGAGATTCTCTGTTCATTCCAGACAGTCTCTTGGTGTGGCAAGTCTTGAAGATGGATGGTTGGAGATTATGGTTGACCGCCG TTTGCCAACTGACGATGGTCGTGGACTCGGGCAAGGAGTGACAGATAATCGGCCGATGAACGTGATCTTTCACTTGCTCCTCGAATCCAACATTTCGTCC GAATCGAAACCGGTCAGCAATCATCTTCCCTTAACCCCATCTCTGCTCTCTCATCGTGTAGGGGAACACTTGAACTATCCATTGCATGCTTTCATTTCAA AGGAATCTGAGGAGTTATCTCTTCAGACACACGGCAGATCGTTCTCTCCTCTATATGCTTCACTGCCTTGCGATTTGCATATTGTGAACTTCAAAGTTGC TCGGCCAGCATTGTTCTCCCGTGACCTGGTCGGAGATTCCAGATTTGTTAGCGATGCTAGGTTTGTTCTGATATTGCAGAGATGGCATTCGGATGCTTCC TACTGTCAAAAAGGCCAGTCGCAACAGTGCACAAGATTCGACAATGATGGCTCCCTTAACATTTTCGAGATGTTCCATGGGTTTTCGATATCGAAAGCTG AAGCGACCTCTTTGAATCTGGTTCATGACGACGTTGAGATGCTGGGGTACAGCGAGCATGTCGGAGATTTATCTCGCGATGGCCGTGTTTCTATCTCGCC GATGGAGATTCAAGCGTACAGGTTGGAGTTACTGCCCAACCGGTAA
AA sequence Show only first row Show all	>Lus10014507 pacid=23170961 polypeptide=Lus10014507 locus=Lus10014507.g ID=Lus10014507.BGIv1.0 annot-version=v1.0 MPLSSYTGSRRGGGGASGSVWSQSILPTSSSSKSKLPSRKPRKRGALISFLFANFFVISLSISLLFLFVTILHFGFPNPFFFSSSTFNSGHSPPVPFSRR RNHPTENDVTKGATVDLTTKDLYDKIDFLDEDGGTWKQGWKVSYRGDEWDNEKLKVFVVPHSHNDPGWKLTVDEYYEKQSRLILDTIVETLSKFESVMRA WFLLAFILCGVSLKRKPGGFKGNFCTDARRKFIWEEISYLEKWWRDASEENRASFTKLVKNGQLEVVGGGWVMNDEANSHFFSIIEQITEGNMWLNDTIG VIPKNSWAIDPFGYSSTMAYLLRRMGFENMLIQRTHYELKKELALHKKLEFVWRQSWDARETTDIFVHMMPFYSYDVPHTCGPEPAICCQFDFARVPGFF YELCPWRQNPEDITPENVNERTQLLLDQYRKKSILYRTNTLLIPLGDDFRYVSVDEAEAQFHNYQLLFDHINSNPSLNAEAKFGTLDDYFQALREESARI NYSLPGEVGSSQIGGFPSLSGDFFTYADREKDYWSGYYVSVGHCQRNQCEKLVTGFSYKLTAARRNLALFQHHDGVTGTAKDHVVQDYGIRMHTSLEDLQ IFMSKAIEVLLGMHLEKLDLNPAKFEADQGWAENNRQPAHKALSPREGTAQSVVLFNLTEQTREEIVMVVVNRPYVTVLDSNWTCVQSQVSPELKHDSSN VFSGRHRVHWKASVPPMGLETYYISNGFVGCETAKPAKLKYFSSTSFSCPKPYACSKLEGDSAEIHNQQQILSFDLKEGLLQKIRHSNGSTYVVAEEIGM YASNGSGAYLFRPLGDAQSIIQTNGLTVITEGPLMEELFSYPKTPYKKNPVSHSTRLYNGANTIQELVVETEYHVELIGKEFDDCELIVRYKTDIDSRRI FYTDLNGFQISRRETYDKIPLQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLEDGWLEIMVDRRLPTDDGRGLGQGVTDNRPMNVIFHLLLESNISS ESKPVSNHLPLTPSLLSHRVGEHLNYPLHAFISKESEELSLQTHGRSFSPLYASLPCDLHIVNFKVARPALFSRDLVGDSRFVSDARFVLILQRWHSDAS YCQKGQSQQCTRFDNDGSLNIFEMFHGFSISKAEATSLNLVHDDVEMLGYSEHVGDLSRDGRVSISPMEIQAYRLELLPNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10014507 [exp]	0	1
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	1.7	0.8885
AT5G26910			unknown protein		Lus10020689 [exp]	2.0	0.8798
AT1G74680			Exostosin family protein (.1)		Lus10024214 [exp]	2.0	0.8267
AT2G31810			ACT domain-containing small su...		Lus10027061 [exp]	5.7	0.7921
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	8.8	0.7878
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	14.1	0.8611
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10023297 [exp]	21.0	0.7642
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	23.9	0.8255
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	27.3	0.7734
AT1G20890			unknown protein		Lus10005486 [exp]	32.8	0.7806

Compare expression of checked genes

Lus10014507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.