Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14940 550 / 0 Major facilitator superfamily protein (.1) AT3G01350 540 / 0 Major facilitator superfamily protein (.1) AT1G22540 367 / 3e-120 Major facilitator superfamily protein (.1) AT1G72130 354 / 1e-115 Major facilitator superfamily protein (.1.2) AT1G72125 347 / 2e-112 Major facilitator superfamily protein (.1) AT1G22550 338 / 2e-109 Major facilitator superfamily protein (.1) AT1G72140 336 / 2e-108 Major facilitator superfamily protein (.1) AT1G72120 330 / 3e-106 Major facilitator superfamily protein (.1) AT3G54450 319 / 7e-102 Major facilitator superfamily protein (.1) AT1G22570 315 / 2e-100 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032177 [exp] 952 / 0 AT5G14940 597 / 0.0 Major facilitator superfamily protein (.1) Lus10005603 [exp] 699 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10039465 [exp] 580 / 0 AT5G14940 489 / 1e-168 Major facilitator superfamily protein (.1) Lus10016932 [exp] 374 / 2e-120 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 355 / 8e-116 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 353 / 1e-114 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10024340 [exp] 322 / 1e-102 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 311 / 2e-98 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10012663 [exp] 306 / 8e-97 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G068500 [exp] 629 / 0 AT5G14940 631 / 0.0 Major facilitator superfamily protein (.1) Potri.017G152800 [exp] 619 / 0 AT5G14940 645 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 359 / 2e-117 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 352 / 1e-114 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 352 / 2e-114 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 344 / 3e-111 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 336 / 2e-108 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 336 / 3e-108 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 336 / 3e-108 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 331 / 2e-106 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10014510 pacid=23170974 polypeptide=Lus10014510 locus=Lus10014510.g ID=Lus10014510.BGIv1.0 annot-version=v1.0 ATGGCAGGGGAGAGGAGAGCTAAGCCAGTAGGCCTCAACAAAGCATGTTGCCTCCTCATAGTGATATCTGGGATGGAGAGGTTTGCATTCAAAGGAGTGG CGTCGAACCTGGTGACGTACCTGACGGACGTGGTGAAGATGAGCAATTCAGCAGCAGCAAAGACTGTGAACAACTGGTGTGGACTGACCTCCATGCTTCC TCTCCTCGTTGCTTCCCTTTCTGAATCCTATTGGGGCCGTTGCTCCACCATCTTGGCCTCTTGTTTCCTCTACATTCTTGGACTAGTAGCATTGACATCA ACAGCAATGGCATGGGGAAGCTACACATCAACCAGCATGAGCTACTCTTTCCTCTTCGGCTCGCTATGTCTCATCTCCCTCGGCCAAGGAGGCTACAACC CTTCTCTGCAAGCCTTCGGAGCAGAGCAGCTACCAGAAACAGAGGACGACGAGGAAGATGACGACGAACTCCCAAAGAAGCAGCCGAGCCTGAAGAGCAA GTTCTTCCAGTGGTGGTATTACGGAGTGTGCGCTGGAAGCCTGATGGGGGTGATGGTGATGTCATACATCCAGGATAACGTTGGCTGGGTGCTGGGATTC GCTATCCCGACCTTGGCCATGGTGGCTTCCATGGCGTTGTTCTGCTTCGGGGGCTCTATTTACCGGTACAATCTGGACGAGGATAGCGTGTCCAATAGCC TCCCATTCCTCATTCGACTTTTTAAGGATGCTGCTAACAAGGTTAAGGTTTGCAGGATCACGTTGTCCGCTCGTCACGATTCTGAGGCTGCTGAACTCGA GCTACAAGAAAAGCCACTCTGCACCGGCAAGCTACGCAATCTTAAAACCACAACAGAGATGCAGGAATCAATCGCGCCAAACAACACCAACAAGAAGAAG AAAACTAGCAATCTGGTGAAAAATTGCAAGACAGTGCTGAGACTGCTCCCAATTTGGGCAATGCTGCTAACCTTCGCGGTCATATTCCAACAACCAGCCA CGTTCTTCACCAAGCAAGGGATGACAATGGAGAGAACCATTATAGCTTCTTCCTCCACCAAATTCGCCATCCCTCCCGCCACGCTCCAGAGCTCCATAAC AATCTCGATCCTCCTCCTCATGCCCCTCTACGACCGGACTCTGATCCCTCTATCGCGAATCGTGACTCGCGACGAGAGAGGGATCACCGTGATGCAGAGG ATGGGGATCGGGATGTTCTTATCAATCTTGGCCATGGTCATCGCTGCCCTAGTCGAAACAAAGAGGCTACAAATCAGTAACGGAATTGTAACGTCATCGT CAGATCATACGGTTCCGATGAAGATATACTGGCTGCTACCACAATACGTTCTGCTGGGGATTTCAGACATATTTACCGTGGTGGGGATGCAGGAGTTCTT CTACGGGGAAGTTCCTGTGAAGATGAGGACGCTGGGGATCGCGCTGTATACGAGCGTGTTTGGTGTTGGGAGCTTCATGAGCGCGATTCTGATATGCTTG GTCGAGTGGTTCGCGCGGTTGAGGAATGAGAAGAGCTGGTTTAGTGACGATATGAGGGAGGCTAGGCTGGATAAGTACTACTGGCTTCTGGCGATCTTGA GCTCTGGTAGCTTGGTTTCGTATGTGATTCTGTGTAAGTTTTACAAGGGGAGTAAGAATGACGATGCCGATGATGATAGTGATCAGGTTCAGAAGCCGAA GGATGATTGTGATGGTGGTGGAGCTGAGAGTTGTGCTTAG
AA sequence Show only first row Show all	>Lus10014510 pacid=23170974 polypeptide=Lus10014510 locus=Lus10014510.g ID=Lus10014510.BGIv1.0 annot-version=v1.0 MAGERRAKPVGLNKACCLLIVISGMERFAFKGVASNLVTYLTDVVKMSNSAAAKTVNNWCGLTSMLPLLVASLSESYWGRCSTILASCFLYILGLVALTS TAMAWGSYTSTSMSYSFLFGSLCLISLGQGGYNPSLQAFGAEQLPETEDDEEDDDELPKKQPSLKSKFFQWWYYGVCAGSLMGVMVMSYIQDNVGWVLGF AIPTLAMVASMALFCFGGSIYRYNLDEDSVSNSLPFLIRLFKDAANKVKVCRITLSARHDSEAAELELQEKPLCTGKLRNLKTTTEMQESIAPNNTNKKK KTSNLVKNCKTVLRLLPIWAMLLTFAVIFQQPATFFTKQGMTMERTIIASSSTKFAIPPATLQSSITISILLLMPLYDRTLIPLSRIVTRDERGITVMQR MGIGMFLSILAMVIAALVETKRLQISNGIVTSSSDHTVPMKIYWLLPQYVLLGISDIFTVVGMQEFFYGEVPVKMRTLGIALYTSVFGVGSFMSAILICL VEWFARLRNEKSWFSDDMREARLDKYYWLLAILSSGSLVSYVILCKFYKGSKNDDADDDSDQVQKPKDDCDGGGAESCA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14940			Major facilitator superfamily ...		Lus10014510 [exp]	0	1
AT3G13980			unknown protein		Lus10015641 [exp]	1.7	0.8478
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	6.8	0.8324
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10010047 [exp]	7.5	0.8252
AT5G15240			Transmembrane amino acid trans...		Lus10012824 [exp]	7.5	0.7868
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10002633 [exp]	7.7	0.8006
AT5G15240			Transmembrane amino acid trans...		Lus10030469 [exp]	10.4	0.7747
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	11.5	0.7912
AT1G61350			ARM repeat superfamily protein...		Lus10018423 [exp]	24.9	0.7476
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	27.0	0.8003
AT1G06980			unknown protein		Lus10038171 [exp]	30.0	0.7443

Compare expression of checked genes

Lus10014510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.