Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20890 916 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 293 / 7e-93 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 293 / 1e-92 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G18190 281 / 2e-88 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 270 / 3e-84 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G02530 209 / 3e-61 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 205 / 1e-59 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 194 / 3e-55 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 191 / 3e-54 TCP-1/cpn60 chaperonin family protein (.1) AT2G33210 86 / 1e-17 HSP60-2 heat shock protein 60-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032176 [exp] 1017 / 0 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 1009 / 0 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10028007 [exp] 705 / 0 AT5G20890 752 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008406 [exp] 301 / 6e-96 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037214 [exp] 285 / 1e-89 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10006457 [exp] 281 / 1e-88 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 281 / 2e-88 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10032467 [exp] 278 / 3e-87 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10036947 [exp] 274 / 1e-85 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341100 [exp] 949 / 0 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 944 / 0 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 315 / 4e-101 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 304 / 5e-97 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 286 / 2e-90 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 281 / 1e-88 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.002G142700 [exp] 280 / 9e-88 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.014G058500 [exp] 275 / 8e-86 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.010G051700 [exp] 274 / 1e-85 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 271 / 2e-84 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10014511 pacid=23170949 polypeptide=Lus10014511 locus=Lus10014511.g ID=Lus10014511.BGIv1.0 annot-version=v1.0 ATGGCATCTTTTGTTGGTGCTATGGCTATTGCCGACCTGGTCAAGACGACTCTGGGCCCGAAAGGGATGGACAAAATCTTGCAGTCCACTGGAAGAGGTC ACGAGGTAACCGTTACCAATGATGGAGCTACCATTTTGAAGTCACTTCACATTGACAATCCAGCTGCTAAAGTCCTTATTGATATTTCAAAAGTCCAAGA TGATGAAGTTGGCGACGGGACGACATCTGTAGTTGTCTTGGCTGGTGAACTACTGAGGGAGGCAGAGAAACTTGTTGCAGCAAAAATCCACCCAATGACC ATCATAGCAGGATATCGAATGGCTGCGGAGTGTGCACAGAAGGCTTTGCTTGAAAGGGTAGTGGATAATAAGGCAGATGAAGAGAAATTCAAGTCAGATC TCATGAAAATTGCTATGACAACTCTGAGCTCAAAAATATTGTCCCAGGATAAGGAACACTTTGGAAAGCTTGCTGTTGATGCAGTTTTGAGGCTGAAGGG TAGCACAAACTTAGAGTCCATCCAAATCATCAAGAAGCCTGGTGGATCACTAACAGATTCTTTCTTGGATGAAGGGTTTATCCTTGACAAGAAAATTGGA ATAGGGCAACCAAAACGGATAGAAAATGCCAAGATTTTGGTAGCCAACACTGCAATGGACACAGACAAAGTAAAGATTTATGGTGCACGTGTTCGTGTTG ATTCAATGGCTAAGGTTGCTGATATTGAAGCAGCCGAGAAGCAGAAGATGAGAGAAAAGGTGGATAAGATAATAGCCCATGGGATTAATTGCTTTGTAAA CAGACAATTAATCTACAATTTCCCAGAGGAACTCTTTGCAAATGCTGGAGTGCTCGCAATTGAGCATGCAGATTTCGATGGGATTGAAAGGCTAGGTTTA GTTACTGGAGGCGAGATTGCATCAACCTTTGACAATCCTGAATCTGTCAAGCTTGGTCACTGCAAACTTATTGAGGAAATTATGATTGGGGAGGACAAGT TGATCCATTTTTCTGGTGTGGCAATGGGCCAGGCATGCACAATTGTATTGAGGGGTGCAAGTCATCACGTGCTTGATGAGGCAGAGAGGTCTCTGCACGA TGCACTCTGTGTGTTATCTCAGACCGTCAATGACAGCAGGGTCTTGTTTGGAGGTGGATGGCCTGAAATGGTGATGGCCAAGGCAGTAGATGAGCTTGCT CGAGCAACCCCTGGAAAAAGGTCGCATGCTATTGATGCTTTTTCAAGGGCTCTCATTGCAATTCCAACCACCATCGCGGATAATGCTGGTTTAGACAGTG CTGAGCTGGTTGCACAGCTTCGAGCAGAGCACCACAAGGATGGATGCAATATTGGGATCGATGTCATCTCTGGATCGGTGGGAGACATGGCAGAGCTTGG AATATCAGAAGCATTCAAGGTTAAACAAGCTGTGTTGCTTTCTGCAACTGAAGCTGCTGAAATGATCCTCCGAGTCGATGAGATCATCACTTGTGCGCCG CGAAGAAGAGAGGATAGAATGTAG
AA sequence Show only first row Show all	>Lus10014511 pacid=23170949 polypeptide=Lus10014511 locus=Lus10014511.g ID=Lus10014511.BGIv1.0 annot-version=v1.0 MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGHEVTVTNDGATILKSLHIDNPAAKVLIDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMT IIAGYRMAAECAQKALLERVVDNKADEEKFKSDLMKIAMTTLSSKILSQDKEHFGKLAVDAVLRLKGSTNLESIQIIKKPGGSLTDSFLDEGFILDKKIG IGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVADIEAAEKQKMREKVDKIIAHGINCFVNRQLIYNFPEELFANAGVLAIEHADFDGIERLGL VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKAVDELA RATPGKRSHAIDAFSRALIAIPTTIADNAGLDSAELVAQLRAEHHKDGCNIGIDVISGSVGDMAELGISEAFKVKQAVLLSATEAAEMILRVDEIITCAP RRREDRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	0	1
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	1.0	0.9673
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	2.8	0.9560
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	4.2	0.9306
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	5.5	0.9500
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10039396 [exp]	6.2	0.9077
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	8.0	0.9324
AT2G01720			Ribophorin I (.1)		Lus10023524 [exp]	10.4	0.8985
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	10.5	0.9205
AT4G34200		EDA9	embryo sac development arrest ...		Lus10014096 [exp]	12.7	0.9013
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	12.7	0.9277

Compare expression of checked genes

Lus10014511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.