Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59970 195 / 8e-60 Matrixin family protein (.1) AT1G70170 189 / 2e-57 MMP matrix metalloproteinase (.1) AT1G24140 179 / 2e-53 Matrixin family protein (.1) AT2G45040 159 / 2e-46 Matrixin family protein (.1) AT4G16640 155 / 9e-45 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032175 [exp] 530 / 0 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10035221 [exp] 228 / 1e-73 AT1G24140 216 / 1e-67 Matrixin family protein (.1) Lus10039464 [exp] 221 / 7e-71 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10005605 [exp] 219 / 6e-70 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10030662 [exp] 196 / 4e-60 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10028955 [exp] 167 / 4e-49 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10004728 [exp] 156 / 1e-44 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10010719 [exp] 154 / 2e-44 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1) Lus10007478 [exp] 154 / 6e-44 AT4G16640 345 / 2e-117 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100400 [exp] 191 / 7e-59 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.008G027600 [exp] 184 / 3e-56 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.013G033200 [exp] 182 / 2e-55 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.012G104600 [exp] 181 / 1e-54 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.019G073800 [exp] 177 / 1e-53 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.019G073700 [exp] 175 / 8e-53 AT1G59970 213 / 7e-67 Matrixin family protein (.1) Potri.019G073400 [exp] 169 / 2e-50 AT1G70170 215 / 2e-67 matrix metalloproteinase (.1) Potri.008G027700 [exp] 167 / 9e-50 AT1G59970 219 / 5e-69 Matrixin family protein (.1) Potri.015G103900 [exp] 169 / 1e-49 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.008G027500 [exp] 167 / 2e-49 AT1G59970 219 / 2e-69 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10014512 pacid=23170898 polypeptide=Lus10014512 locus=Lus10014512.g ID=Lus10014512.BGIv1.0 annot-version=v1.0 ATGGCGTCCAAATATTTCATTCTCCTTCTCCTCCAATTCATTTCCTTTTCCCCCCTCGCAGTATTCCCACACGTCCACCATACCCATTACTCTATTTCAC ACCTGGATAGCGCCGTCGGCTCAAAAAAAGGCGACCGTGAACCCGCCATCTCCGCCGTCAAATCCTACCTCCGCCGCTACGGCTACATGCCCGCCTACGA AAACTCCGACGCCGACGACCAATTCGACTCCTCACTCGAATCCGCCCTCAAAACCTACCAATCCAACTTCAAACTGATGCCCACCGGAGAACTCGACTCC GCCACCGCAAAAATGATGAAAGCCCCGCGCTGTGGCGTCCCCGACATCGTCCACGGCAAAAACTGGATGTTCAACTCGCCGTCGCCGCCGAAGAGCCGCC GTTTCCGGACCACAACCCGGTACAATCTCTTCCCCGGGAACCCCAAATGGCCTGAGGATAAACGGAATTTCACATACGCATTCCTCGCGGGGACTCCGGA GATGGCGAAGAACCCCGTGGCGAACGCGTTCAAGAAGTGGGAGTCAAAGTTCCGATCGAGATTCTCGTTCGCCGGGACGGAGGATTACGGGTCGGCGGAT ATCAAGATCGGGTTCTACAGCGGGAATCATGGGGATGGCGGGTCGTTTGACGGGCCAGGTGGGGCTTTGGCCCATTCGAGTCAGCCTGGGACTGGGCTGC TGCATTTCGATGCGGAGGAGACATGGGCCGTGGGCCCGGTTAAGAAGGCGTTTGATGTCGAAACGGTGGCGTTGCATGAGATCGGGCATATTTTGGGGCT GATGCATAGCTCTGTCCCGTCGGCGATTATGTATCCGGAGATCGGCGATGGTGTGACGAAGAGGTTGAGCAAGGATGATCTTCACGGCATCAGGGCTTTG TATAATATCTGA
AA sequence Show only first row Show all	>Lus10014512 pacid=23170898 polypeptide=Lus10014512 locus=Lus10014512.g ID=Lus10014512.BGIv1.0 annot-version=v1.0 MASKYFILLLLQFISFSPLAVFPHVHHTHYSISHLDSAVGSKKGDREPAISAVKSYLRRYGYMPAYENSDADDQFDSSLESALKTYQSNFKLMPTGELDS ATAKMMKAPRCGVPDIVHGKNWMFNSPSPPKSRRFRTTTRYNLFPGNPKWPEDKRNFTYAFLAGTPEMAKNPVANAFKKWESKFRSRFSFAGTEDYGSAD IKIGFYSGNHGDGGSFDGPGGALAHSSQPGTGLLHFDAEETWAVGPVKKAFDVETVALHEIGHILGLMHSSVPSAIMYPEIGDGVTKRLSKDDLHGIRAL YNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59970			Matrixin family protein (.1)		Lus10014512 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018418 [exp]	2.6	0.6923
AT1G16740			Ribosomal protein L20 (.1)		Lus10034785 [exp]	9.5	0.5820
					Lus10034553 [exp]	12.2	0.6333
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10042319 [exp]	16.6	0.6667
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	19.1	0.6248
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10004822 [exp]	28.7	0.6310
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	43.4	0.5897
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	51.3	0.5457
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	51.9	0.5457
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	52.6	0.5457

Compare expression of checked genes

Lus10014512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.