Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38730 446 / 8e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 192 / 2e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 188 / 4e-54 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09680 186 / 4e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 185 / 6e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61400 179 / 5e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 174 / 1e-49 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 171 / 9e-49 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09820 171 / 2e-48 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G15630 171 / 2e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032174 [exp] 607 / 0 AT5G38730 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 190 / 1e-54 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 189 / 1e-54 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 188 / 2e-53 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 185 / 6e-53 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 183 / 1e-52 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 182 / 7e-52 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 178 / 8e-51 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10016727 [exp] 167 / 2e-47 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G108600 [exp] 510 / 6e-180 AT5G38730 762 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 193 / 5e-56 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G147700 [exp] 191 / 2e-55 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 184 / 9e-53 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131400 [exp] 181 / 3e-52 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 182 / 1e-51 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G105600 [exp] 179 / 1e-50 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 172 / 4e-49 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 172 / 2e-48 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 170 / 3e-48 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014513 pacid=23170880 polypeptide=Lus10014513 locus=Lus10014513.g ID=Lus10014513.BGIv1.0 annot-version=v1.0 ATGAGGGCCAATGCCTTGCAGTCGCATTTGCATGCCTGCACCGTGTTGTTAAACTCTTTGGTCAAAGATAGGTTGACTGATACAGTTTGGAAAGTGTATA AGAAAATGGTTAAACTTGGTGTAGTTGCTAATGTCCACGTGTTCAATGTCTTGATTCATGCTTGCTGCAAGTCTGGAGATGTGGAGAAGGCTGAGAACTT GTTGCCTGAAATGGAATTGAAAGGTGTTTCTCCTGATATTTTCACTTACCATACGCTTATTTCTTTGTATTGCAAAAAGGCCCTCTCTGTTCAAGGTAGG ATGGATATGGCAGGGATTGTTCCTGATATTGTTACTCATAATTCTCTGATTTATGCATTCAGCAGAAAAGGTAGAATGAGGGAGGCTATGAGGCTTTTTA AGGAGATTAAAGATGCGATCCCCAACCATGTGTCTTACACTACTTTGATAGATGGTTACTGCAGGGTCAATGATTTTGAAGCAGCCTTGAGTTTGAAAGC TTCCATGGCTGATAAAGGGCTCTACCCAACAGTAGTTATGTACAATTCGATTCTTCTCAAGTTGTGCGAGGGAGGCAGGATAAGGGATGCGAATAAACTC TTGAGTGAGATGAGTGAAAGGAACGTTGAACCAGATAACATTACATGCAACACCTTGATTAATGCCTATTGTAAAATAGGAGATATGGCATCAGCTTTGA AAGTGAAAGATAAGATGATGGAAGCTGGTCTAAAGCTAGACGTGTTTACCTACAAGGCATTAATCCATGGCTTTTGCAAGGCACGTGATATGAAATGTGC CAAAGAGTACTTATTCAGTATGCTTAATGCTGGTTTTTCTCCCAGCTTTTGTACCTATTCATGGCTAGTAGATGTTCACTGTGACCAGCAAAAGGAGGAG GCTATCATTAAACTTCCTGATGAATTTATCGGAAAAAAGGTCTTTGTGTGA
AA sequence Show only first row Show all	>Lus10014513 pacid=23170880 polypeptide=Lus10014513 locus=Lus10014513.g ID=Lus10014513.BGIv1.0 annot-version=v1.0 MRANALQSHLHACTVLLNSLVKDRLTDTVWKVYKKMVKLGVVANVHVFNVLIHACCKSGDVEKAENLLPEMELKGVSPDIFTYHTLISLYCKKALSVQGR MDMAGIVPDIVTHNSLIYAFSRKGRMREAMRLFKEIKDAIPNHVSYTTLIDGYCRVNDFEAALSLKASMADKGLYPTVVMYNSILLKLCEGGRIRDANKL LSEMSERNVEPDNITCNTLINAYCKIGDMASALKVKDKMMEAGLKLDVFTYKALIHGFCKARDMKCAKEYLFSMLNAGFSPSFCTYSWLVDVHCDQQKEE AIIKLPDEFIGKKVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10014513 [exp]	0	1
AT2G27410	B3		Domain of unknown function (DU...		Lus10030994 [exp]	1.7	0.6835
					Lus10013299 [exp]	5.5	0.6490
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	13.6	0.6312
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	17.0	0.6458
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	30.9	0.6007
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10033389 [exp]	40.1	0.5147
					Lus10032915 [exp]	47.7	0.5331
AT2G27520			F-box and associated interacti...		Lus10004586 [exp]	50.2	0.5592
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10043234 [exp]	54.8	0.5311
					Lus10006287 [exp]	56.1	0.5523

Compare expression of checked genes

Lus10014513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.