Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79120 421 / 9e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 153 / 2e-42 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 145 / 5e-39 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 130 / 5e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 117 / 1e-29 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 116 / 3e-29 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G45790 115 / 4e-29 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 114 / 2e-28 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 112 / 7e-28 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 110 / 8e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032172 [exp] 595 / 0 AT1G79120 429 / 2e-150 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 145 / 9e-40 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 130 / 4e-34 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 131 / 7e-34 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 127 / 4e-33 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 129 / 6e-33 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10041673 [exp] 124 / 8e-32 AT1G06440 495 / 2e-175 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005755 [exp] 122 / 9e-31 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027440 [exp] 121 / 1e-30 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G439100 [exp] 483 / 2e-171 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 152 / 7e-42 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 129 / 1e-33 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 125 / 2e-32 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 125 / 1e-31 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 124 / 2e-31 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 122 / 4e-31 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.015G141700 [exp] 116 / 8e-29 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 113 / 2e-27 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 111 / 4e-27 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10014514 pacid=23170959 polypeptide=Lus10014514 locus=Lus10014514.g ID=Lus10014514.BGIv1.0 annot-version=v1.0 ATGCAAGGAAGACAATCGTCACTTCGGTCCTATCTGTGTAGCAGGACTTATGACTCGGCGTTCCCATTTCAGAACTCTGGCTCAATCTTTCTTTCGAATA GGCAAATTGCAAGCGGAGGGAGGAGGCCGAAGAAGAAGATATACAACAGAGACAATGACCTCGACAAAGTCATGGACTTGCAGAAGAAACCGTCAGTCAT CCTCTACGTTGGTGGCGGTTCAGATAAAGCTCCACCTTTCGTCACACTGACGGAAAGAGCTTCAAAGATCACTAGTGAAGAATCTGAAGCTAGAGCGTTG ATGGAGCCAACATTGGTCAGAAATTTGAGGAAGTTGTTAATGATGTCAGTTGATTGCAGGGTGCCATTAGAAAAGGTTGAGCTCATTGGAAATGAGTTAG GCTTGCCTCTAGATTTCAGGGAGTCTTTGATTCCCAAATATCCGCATTTTTTTTCGGTGAGGGAGGATTTTAAGGGGAAACCTTGCCTGCATTTAGAGCA CTGGGATTCATCGTTAGCAATGAGTGCTCGTGAGGAAAGATTGGATCTTGATGGAGTTCCACTCTCAAACCCATCTCGAAAGCTAGTTAGAATCTCAAGA GATGGAAATTACTTGGGACCATTTGCTTTCAAGATACAGTTTGCTGCTGGTTTCAGGCCGAATAACAGCTTCCTCGAGGAACTCGAAAGGTGGCAGAGAC TGGATTTTCCTTCTCCATACTTGAATCCCAGGACATTCGAGGCTGCTGATCCTAAGGCAAGAAAACGTGTCGTGTCAGTGCTGCACGAGCTTCTCAGTTT GACCATGGAGAAAAGATTGACATCTTCACAGTTGGATGCGTTTCATTGTGAGTATTTGTTGCCGTCAAGGTTGCTGCTTTGTTTGATAAAGCATCATGGT ATTTTTTACATCACAAATAAAGGTGCAAGAAGTACAGTCTTCTTAAAGGAAGCATATGATGGTACTAATTTGATCACAAAGTGCCCAATACTGTCACTCA ATGATAAGTTTGTTGCTCTCAGCGGCCGTAGAGTGCTCAATTCTTGTAATTCAATGAGTTCCTATTCTTGA
AA sequence Show only first row Show all	>Lus10014514 pacid=23170959 polypeptide=Lus10014514 locus=Lus10014514.g ID=Lus10014514.BGIv1.0 annot-version=v1.0 MQGRQSSLRSYLCSRTYDSAFPFQNSGSIFLSNRQIASGGRRPKKKIYNRDNDLDKVMDLQKKPSVILYVGGGSDKAPPFVTLTERASKITSEESEARAL MEPTLVRNLRKLLMMSVDCRVPLEKVELIGNELGLPLDFRESLIPKYPHFFSVREDFKGKPCLHLEHWDSSLAMSAREERLDLDGVPLSNPSRKLVRISR DGNYLGPFAFKIQFAAGFRPNNSFLEELERWQRLDFPSPYLNPRTFEAADPKARKRVVSVLHELLSLTMEKRLTSSQLDAFHCEYLLPSRLLLCLIKHHG IFYITNKGARSTVFLKEAYDGTNLITKCPILSLNDKFVALSGRRVLNSCNSMSSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10014514 [exp]	0	1
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	1.0	0.8525
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10024376 [exp]	7.4	0.7817
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	7.7	0.8040
AT4G20770			Pentatricopeptide repeat (PPR)...		Lus10038431 [exp]	13.0	0.8090
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017386 [exp]	14.4	0.7759
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	14.4	0.8345
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	15.0	0.8068
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031846 [exp]	19.2	0.7622
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	23.0	0.8004
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	23.6	0.7872

Compare expression of checked genes

Lus10014514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.