Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT3G07170 75 / 9e-16 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G48680 72 / 6e-15 Sterile alpha motif (SAM) domain-containing protein (.1) AT2G45700 49 / 3e-06 sterile alpha motif (SAM) domain-containing protein (.1) AT3G48800 46 / 2e-05 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G23680 46 / 2e-05 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030825 [exp] 95 / 7e-22 AT1G70180 104 / 8e-25 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10030661 [exp] 90 / 4e-20 AT1G70180 102 / 6e-24 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10022780 [exp] 85 / 2e-19 AT3G07170 219 / 5e-73 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10038185 [exp] 77 / 2e-16 AT3G07170 234 / 9e-79 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10011841 [exp] 64 / 3e-11 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10016718 [exp] 45 / 4e-05 AT5G23680 173 / 6e-52 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10036012 [exp] 45 / 5e-05 AT5G23680 171 / 4e-51 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10038078 [exp] 45 / 6e-05 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036500 [exp] 138 / 3e-38 AT1G70180 134 / 1e-35 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.008G193300 [exp] 132 / 9e-36 AT1G70180 122 / 3e-31 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.002G244700 [exp] 82 / 2e-18 AT3G07170 213 / 1e-70 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G190800 [exp] 79 / 2e-17 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.012G104700 [exp] 49 / 2e-06 AT3G48800 166 / 2e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.015G104000 [exp] 48 / 4e-06 AT3G48800 115 / 5e-30 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G218300 [exp] 44 / 0.0002 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.003G164600 [exp] 42 / 0.0003 AT3G48800 133 / 5e-37 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.001G062800 [exp] 42 / 0.0004 AT3G48800 136 / 8e-38 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF00536 [flax] [poplar] SAM_1 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10014516 pacid=23170943 polypeptide=Lus10014516 locus=Lus10014516.g ID=Lus10014516.BGIv1.0 annot-version=v1.0 ATGTCCTCCAACACTAAGGTCACTATCACCCTTGGCCGCTCCGGCAAGGTAGTGACTAAGGAAAGTTTTAAACGCCCTCCAGTGGCGAGATTGTGGAGTT ACGATGATGGCTTCTCATCATTGTCTTCCAACAAAGGGCACAGAGGGGATGGCATGCAACGGAGTTCTGGTCTTGCTGGAAAGAATGGTAACGCTGACAG TTCTGTATTCCTTTGTGTTGGAATTACTGAAGGATCTCAAATTGCTCCAAATGATCTCCGGTTGAAGCTCATGCGTAAAAGGCAAAAAAGTGATGTTGTT AAGCAACGCCAGAATTCTGGCAAACATGAAAGATTATCAAGATCCAGTGAGACTGTGGTGGGTTATCAAATGCTATCAAGCAGGCCTTCTTCCAGTCAGT ATAGCAATTTCAGGCCGCTCTGTCCTGATGAATTTCGTAGTGATTTCAGTCGGGCGGACTCACACAGGGGGACTAACCCTTCTCAGGTCATGGGAGGATC AAGAGCAAGATCTCCTGATAGAATCTTCAGAGCTACTCGTGAACTTCCCCCTCCCAGAAATTCCAGCCAAATACAACGAACCAAACCAATTAGGAATGGT GATTTCTCAAGCAGGAGAAGTTTGTTACCCAATGGTGGAATCAGTGCGCCAAGGCCTTTGTTGATGAGCTCTTCGCCTCTTACGCCAGTGAGACCTATCC CTCAAACTTTGACTCCTATTCCACGAGTTGCACCGACTAGTGAAACTCCAAAACAGGTCTGGCGGAAGGTTGAGGTACCTTCTACCGTGCCCAGTTTATT GCATTCGCTTGGTCTGGGAAAATATTGCATCACTTTCCAGGCAGAAGAAGTGGACATGATGGTACTGAAGCAGATGAAGGAGAAAGACCTTAGAGATATG GGCATACCAATGGGACCAAGAAAGAAGATCCTTCTCGCTTTATCGCCTCCTTGA
AA sequence Show only first row Show all	>Lus10014516 pacid=23170943 polypeptide=Lus10014516 locus=Lus10014516.g ID=Lus10014516.BGIv1.0 annot-version=v1.0 MSSNTKVTITLGRSGKVVTKESFKRPPVARLWSYDDGFSSLSSNKGHRGDGMQRSSGLAGKNGNADSSVFLCVGITEGSQIAPNDLRLKLMRKRQKSDVV KQRQNSGKHERLSRSSETVVGYQMLSSRPSSSQYSNFRPLCPDEFRSDFSRADSHRGTNPSQVMGGSRARSPDRIFRATRELPPPRNSSQIQRTKPIRNG DFSSRRSLLPNGGISAPRPLLMSSSPLTPVRPIPQTLTPIPRVAPTSETPKQVWRKVEVPSTVPSLLHSLGLGKYCITFQAEEVDMMVLKQMKEKDLRDM GIPMGPRKKILLALSPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10014516 [exp]	0	1
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	5.9	0.7480
AT1G74160			unknown protein		Lus10034677 [exp]	11.2	0.7457
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	21.1	0.7192
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	23.1	0.7182
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	27.9	0.7123
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	30.9	0.7212
AT1G74160			unknown protein		Lus10034678 [exp]	31.0	0.7094
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	34.7	0.7126
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10041276 [exp]	50.3	0.6582
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	52.9	0.6993

Compare expression of checked genes

Lus10014516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.